Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00329 ATGATGAAACCCATAGTTACTCATGGATGTTTAAAGCAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGGGTCATATAAGGTTCTTCCTTTCTCTGGGTTAAAGATCTGCGTGACTGGAATCCCAGCAGGTGATAAGTATAAGGCGGCAAAATGCTGGGGTCGCATTCATATTGTGACAATGAAATGGTTTGATCAATCTGTTGCTCAAAGCGCATGTCTGGATGAAGAGTCCTACCCTGTTCAGAGTGAATCTTTCTCTTCAGACTCAACAGCGCAACATAGCCAGGAAAAGGATATTGGGAAAATGCCATATGGCCCATCCTCAAGAGCCACAGATTCAAAAATGCTAGTTTCTGGCTGCGTCAATTCTCTGTACTTAGCAGAGTGCAGAAtattatttgttggttttgaaGCTTCTGAAATGTGGAAGCTAGTTAATATGGTGCGCAAAGGCGGAGGCTCCCGATGCTTGTCTTTCAATGATAAGTTGACACACATAGTAATTGGGAATCCCACAGAAATGGAAAGGGAGGATGTAAGGCCTGCTCTAGATGTCATTTATGTTGTTAAATCCGCATGGCCTGAAGATTGTGACCGCGAAAAGAAACAAGTCCCTGTTCTACGAAGGCACAATGCATATGATATTGTTTTTCCAAAAGCTAACTTAGGGGTTACTGACATTGTGCCTATGGATCAAAGTAAAAGCTCAAGCAGTCGCCAAAGCTTCCAGACTGATCAGGTGGTGGTGGGTATTAAGGACTTTGGAGTTAAAATGCCGGAATCTTTGAAGTCAACAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCGAATTTATTTCCTGAAGAAAGAGATGGATGCTTGCTGGATATTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCTTGTTCCATTGCCTGATTTTAAAAGTCTCCGGTTTTGTGTTTCacaatatgaaaataaagaaagGACCCTACTTTTGAAATTGTGTGAAGTTCTAGGAGCTAAAATTTCGGATAGGTTGACGAAGAAGGTCACTCATTTGTTGTGTAAATTCACCGATGGGCCCAAGTACGAGGCTTCTGTTAAATGGGGGATCCAGTCAGTTACATCCGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTATTTCCATTGATCAATTTTTGCCCAAAGAAGTCACTACTCAAGACCGAGAGGCAGATGTTTGCAGAGTGAGTCAATTTCCTACACAGGCTGTTCGAACTATAAATGACATGCCGTCCCAGTTTCCAAGTCAACCACAAAGTTTGAGAAACACGGCAAAGAAAAATGTAGATAGTGGAGTTGAAAATGATGGGACTCATTCTAAAGACAATGTGCTCAAAGATGCTACGGAGGCAGCCGATGCAGCAACTGGCATTGCTTCTACAATTGAAGAGTTGGTAGAAATGATTGACAAGAGGTGCCCAAGGAATACAGGGTATGAGAGAAGTGTCTCCTTGTGTGATCAATTCGGTGGAGTTGTCGGCGAAGCCAAAGACAATTCAAATCATCCAAATCCTCGTATTATTGTCTCCGGACCATCAAAGTTGTTAAACAGAGGAAAGGATGATAATGATGAGGCTGATCAAACAGCAGGATTATATGATTCTTCTCCAGATCCGGTTGTCACTTATGAAGAAGATAATTCTGGAAGGCAAATGCTTCTAGATAGACTTCGAGATCGAATGCAGTGA 1722 0.4111 MMKPIVTHGCLKQCSDEHRVVPQGSYKVLPFSGLKICVTGIPAGDKYKAAKCWGRIHIVTMKWFDQSVAQSACLDEESYPVQSESFSSDSTAQHSQEKDIGKMPYGPSSRATDSKMLVSGCVNSLYLAECRILFVGFEASEMWKLVNMVRKGGGSRCLSFNDKLTHIVIGNPTEMEREDVRPALDVIYVVKSAWPEDCDREKKQVPVLRRHNAYDIVFPKANLGVTDIVPMDQSKSSSSRQSFQTDQVVVGIKDFGVKMPESLKSTNVFKGKTFCFSNLFPEERDGCLLDIDSHILYSPLPCLVPLPDFKSLRFCVSQYENKERTLLLKLCEVLGAKISDRLTKKVTHLLCKFTDGPKYEASVKWGIQSVTSEWIFECVKQNGVISIDQFLPKEVTTQDREADVCRVSQFPTQAVRTINDMPSQFPSQPQSLRNTAKKNVDSGVENDGTHSKDNVLKDATEAADAATGIASTIEELVEMIDKRCPRNTGYERSVSLCDQFGGVVGEAKDNSNHPNPRIIVSGPSKLLNRGKDDNDEADQTAGLYDSSPDPVVTYEEDNSGRQMLLDRLRDRMQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00329 573 Gene3D BRCT domain 114 209 IPR036420 -
Tsu06g00329 573 ProSiteProfiles BRCT domain profile. 122 206 IPR001357 -
Tsu06g00329 573 SUPERFAMILY BRCT domain 126 206 IPR036420 -
Tsu06g00329 573 SUPERFAMILY BRCT domain 304 393 IPR036420 -
Tsu06g00329 573 Pfam twin BRCT domain 312 374 IPR001357 -
Tsu06g00329 573 MobiDBLite consensus disorder prediction 421 442 - -
Tsu06g00329 573 SMART BRCT_7 124 202 IPR001357 -
Tsu06g00329 573 SMART BRCT_7 306 382 IPR001357 -
Tsu06g00329 573 MobiDBLite consensus disorder prediction 507 559 - -
Tsu06g00329 573 SUPERFAMILY BRCT domain 2 81 IPR036420 -
Tsu06g00329 573 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 3 540 - -
Tsu06g00329 573 Gene3D BRCT domain 304 397 IPR036420 -
Tsu06g00329 573 Gene3D BRCT domain 32 85 IPR036420 -
Tsu06g00329 573 MobiDBLite consensus disorder prediction 421 453 - -
Tsu06g00329 573 MobiDBLite consensus disorder prediction 84 107 - -
Tsu06g00329 573 ProSiteProfiles BRCT domain profile. 309 392 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00329 Tsu-Chr6 2696683 2702645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00329 3 571 Core DNA Replication Machinery Family AT1G77320 30.978 1.62e-94 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00329 K10728 - csv:116406271 310.457