Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00316 ATGGGAAGTTGTTGCAGCTGCCAAGGTGAATGTAACCAAAAGGTTATTGATGGTGTGACCGGGGTCATAGTAAATGGATCCTCTAAATATGTCTCAATGTACATTCAAAAGGGTTCTAAAGGAATTAATCAAGATGCAATAACAGTTTGGGAGAACTTTGGTGGAGAAGAAGACACAATATTTTGTGGTGTGTTTGATGGTCATGGTCCTCGAGGACACAAATTTGCACAATCTATACGTGACAATTTACCCTCCACACTCTCAACAACAATCAAAATGTCACAACAAAATGGCTCCAATGAAAATGATGATGCTAATGCTACAAACAAAATCACTTCTAATAATTCATGGGAAGAACACTTTTCTAGCTCCTTCAACCAAATGGATGAACATCTTGCTAAGAACGTTGACACCGACGGACTTTGTGGAGGTTCCGTAGCggtaacattaattaaaaaggGTGACAAATTGATAATTGGCAATTTAGGGGATTCTCGTGCAGTTCTTTGCACAAAAGATGAAAATCAACTTATTCCTATTCAACTTTCTGTTGACATGGTTCCAGATGTTCCAAgTGAAAGTAATAGAGTGATTAAGTGTGGAGGTAGAGTTTTTGCAGCAGAACAAGATccagatgtaaaaagaatttggCTGCCTGAAGGTGACTGCCCTGGATTAGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTAAAACAATATGGCCTCTCCTCAGTTCCTGATTTATCTTATAGAAAACTTACCGAGCAAGATCAATTTATTGTTTTGGCCTCCGACGGGatatgGAATGTGCTATCAAACGAAGATGTAATTAACGAAGTTGCATCAGCACCAAAAAGATCATTAGCAGCCAAATTGTTAGTGAAACGTGCAGTTAATGCTTGGAAAAACAAGTATCCATATTATTATGTTGATGATTGTTCAGCCATATGTTTGTTCTTGAATGatgataaatttaatatgtaa 984 0.3598 MGSCCSCQGECNQKVIDGVTGVIVNGSSKYVSMYIQKGSKGINQDAITVWENFGGEEDTIFCGVFDGHGPRGHKFAQSIRDNLPSTLSTTIKMSQQNGSNENDDANATNKITSNNSWEEHFSSSFNQMDEHLAKNVDTDGLCGGSVAVTLIKKGDKLIIGNLGDSRAVLCTKDENQLIPIQLSVDMVPDVPSESNRVIKCGGRVFAAEQDPDVKRIWLPEGDCPGLAMSRAFGDFCLKQYGLSSVPDLSYRKLTEQDQFIVLASDGIWNVLSNEDVINEVASAPKRSLAAKLLVKRAVNAWKNKYPYYYVDDCSAICLFLNDDKFNM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00316 327 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 16 324 - -
Tsu06g00316 327 Pfam Protein phosphatase 2C 52 298 IPR001932 -
Tsu06g00316 327 SUPERFAMILY PP2C-like 26 322 IPR036457 -
Tsu06g00316 327 SMART PP2C_4 21 318 IPR001932 -
Tsu06g00316 327 ProSiteProfiles PPM-type phosphatase domain profile. 30 320 IPR001932 -
Tsu06g00316 327 PANTHER ALPHABET, ISOFORM E-RELATED 16 324 - -
Tsu06g00316 327 CDD PP2Cc 30 320 IPR001932 -
Tsu06g00316 327 Gene3D - 24 323 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00316 Tsu-Chr6 2577707 2579892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00316 9 325 PP2C-type Phosphatase Gene Family AT5G01700 49.530 6.52e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00316 - - cam:101501265 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00316 06 2577707 2579892 Tsu06g00316 06 2577707 2579892 ECH
Tsu04g01465 04 15139502 15142239 Tsu06g00316 06 2577707 2579892 PCT