Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00313 ATGTCTTCTAGTTTCAACAACAACTTTTTCAACACCACCACTACCTTGGATGTTGCCAAATTTGTTGGATTTGATGAAGTGACTTACCCTTCTTATTCTGATTTTCCACCTGGTTTTAGCCCTGAGGACTTATTCAATTCACcttcctttctttcttctcctaaGATTCCTTCATCTTATACAAATGAGCCTTTTTCTGAACAAAGCATGAACCAACAACATAACAAGGAATTAGAAGAGATAAACTTCTCTGAGCACTCTTtccaaacacaaaaacagaaCATACAAGATCTCTTTCAATCTTCCACAGATATGTTTCAAGTGGAGGAGCCACTAAAGAAAGAGGACACATTGATATTCAATGAAACTACAAAGCAAAACAATTTTTCATATGAGAGAACAACAAAACATgaaacacaaacaaattctTCAGCTCCTAGTTCTACTTTTTTCAACAACAATAATTCTTCTATGTCTATtaaagaacaaagaaaatcagAAGAAGATGGATACAAGTGGAGAAAATATGGAGAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTATAAGTGCACTAATCCTATTTgcttgatgaagaagaaagttGAAAGGTCTTTGGATGGAGGATATATTACTGAAATTGTTTATAAGGGAAATCATAACCATCCTAAGCCTTCTTCTACAAAAAGAAGAACAAGTTCACAATCAATGGTTTCTGATTATTCTTTGGGAGAGGATGAATTTGAGCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGAGTTTGGACCTGAGGCCAAAAGATGGAAGGGAGATAATGAAAATGAATCATATTCCATAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGATATAGGTGGAGAAAATATGGACAGAAAGTAGTCAAaggaaatccaaatccaagGAGCTACTACAAATGTGTAATCCAAGGTTGTCCTGTGAGAAAACATGTTGAAAGAGCAGCACATGATATGAAAGCAGTAATAACAACATATGAAGGGAAACATAACCATGATGTACCTTTAGGCAGAGGAAGTTCAAGCTATAACATGAACAAAACCAACACATGTAATGTAACACCTATTAGGCCTTCAACAGTTACTAATTATTCTAGCTTATCAAATTTCACAAATTCACTTCATGATGATTCAAAGCTACCAAATTATGGAACTCAAGAAGAACATTTTCAACTagacatgatgatgatgaattctAAAAGCTTTTTGGATAAATCAATTGATTCAAATACCAATTATGAACAATACTCGGCTAAGGATAACTCTTTCCTTCAGGCTTTTATGTCAAAGAACTTTTAA 1392 0.3075 MSSSFNNNFFNTTTTLDVAKFVGFDEVTYPSYSDFPPGFSPEDLFNSPSFLSSPKIPSSYTNEPFSEQSMNQQHNKELEEINFSEHSFQTQKQNIQDLFQSSTDMFQVEEPLKKEDTLIFNETTKQNNFSYERTTKHETQTNSSAPSSTFFNNNNSSMSIKEQRKSEEDGYKWRKYGEKQVKGSENPRSYYKCTNPICLMKKKVERSLDGGYITEIVYKGNHNHPKPSSTKRRTSSQSMVSDYSLGEDEFEQTSQTSFSGGDYDEFGPEAKRWKGDNENESYSIEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCPVRKHVERAAHDMKAVITTYEGKHNHDVPLGRGSSSYNMNKTNTCNVTPIRPSTVTNYSSLSNFTNSLHDDSKLPNYGTQEEHFQLDMMMMNSKSFLDKSIDSNTNYEQYSAKDNSFLQAFMSKNF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00313 463 MobiDBLite consensus disorder prediction 218 241 - -
Tsu06g00313 463 ProSiteProfiles WRKY domain profile. 301 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 460 IPR044810 GO:0003700
Tsu06g00313 463 ProSiteProfiles WRKY domain profile. 168 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 Gene3D WRKY domain 291 367 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 Gene3D WRKY domain 152 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 SUPERFAMILY WRKY DNA-binding domain 298 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 SUPERFAMILY WRKY DNA-binding domain 165 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 Pfam WRKY DNA -binding domain 168 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 Pfam WRKY DNA -binding domain 307 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 SMART WRKY_cls 167 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 SMART WRKY_cls 306 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g00313 463 MobiDBLite consensus disorder prediction 136 160 - -
Tsu06g00313 463 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 25 460 - -
Tsu06g00313 463 MobiDBLite consensus disorder prediction 136 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00313 Tsu-Chr6 2548408 2551946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00313 152 404 WRKY Transcription Factor Family AT2G38470 56.271 5.31e-98 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu06g00313 WRKY 7.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00313 K13424 - gmx:100127367 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00313 06 2548408 2551946 Tsu06g00313 06 2548408 2551946 ECH
Tsu04g01480 04 15236492 15240088 Tsu06g00313 06 2548408 2551946 PCT