Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00305 ATGAGAAACTCATTTAGGACTTTTCACAAACACTTTACATTCATTTCTTTCCATAAAAATCCTCACTCTTATGGTTTCCTAACTTCTTCTTCTCCTACACACCCCGctttctctcaatttctctcatCATACTCCTcatcttcatcttctacatTTATGGAGGTATTCAAAGCAATTGCTAAGCAAGATCTTGCATCCTACGGAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTATAAGCAACTTATCTCGTCGGCACTGAAGATATCTAATCTCTTGTGTGGAAGTGATGTCAAAGCAGGAAATCTTGGTGGAGCACGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGACTTGGCTTAGTGGAGGTGTTGCTGTTCCACTTGCAGTCAGCTATCCAGAAGTAGAGCTCCTGTATGTGATGAATAATTCGGACACATCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAACATTGCCAATAAAACGTCTTCTCAATTTTTTCATCTTCCGCCTGTTGCTAATAAATCGTTAGAGAAGAGTAGAGATGAACATTCACATGATGGGGAAATTGATTCAAACAGAATTTTCCTGGAGAATATTCAAAGATCAAGTGAAGATCCGGCACTCATTTTGTACACTAGCGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACACATGGAAGCATCATTGCGCAGGTCCAATCCTTGACAAAAGCGTGGGAGTACACATCTGCCGATCAGTTTTTGCATTGTCTACCACTGCATCATATCCAtgaaagtttttttaATCTAATTGTCCTGTTGAAGGTCGAGTTTTTGCCAAAATTTAGTGTCAGGGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGAAGGATCTAAAGCTGATGATGCTATAACTGTATTCACTGGAGTTCCAACTATATATGCCCGATTAATTCAAGGTTATCATGCGATGGATCCAGAGCTACAAGCTGCTTCAGCATCTGCTGCAACGAACTTGCGTCTAATGATGTGTGGGTCCTCAGCACTTCCTCAACCTGTTATGCAAGAATGGGAAGCCATCACCGGGCATCGTTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTGAGCGTAAGGCGGGCACAGTTGGAAAACCATTGCCCGGTGTGCAGCTGGAAGTGTTTGAATGCAGAAAACCTGATAGGGAGAAAGAAAAGGAATATGCAGGAGAGGAAAATTATGGGGTAATGTTGGTAGCTTTGCCCCAGGTAACGAAGGAATCATTTACAGAAGAAGGATTCTTTAAGACCGGAGATGCCGTTACAACAGATAAAGATGGATATTACATCATTCTAGGACGTACTAATGCGGATATCATCAAGGCCGGTGGCTATAAGCTGTCTGCATTAGAAATTGAATCACATCCAGCTGTCTCAGAATGTTGTGTCTTGGGCTTACCACACAAAGAATATGGAGAAATTGTTGGTGCAATTATCGTGCCAgaagaaaatgttaaacaaaaGCGAGATGAAGAGTCAAAGCCTGCTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGATAAACTTGCACCTTACAAGATACCAACTCGACTTATCGTATGGGACTCACTCCCTCGCAATGCAATGGGGAAGGTAAGTAAAAAAGAGCTGAAGAAGATGCTAGCTTCAGAACAGTAA 1755 0.404 MRNSFRTFHKHFTFISFHKNPHSYGFLTSSSPTHPAFSQFLSSYSSSSSSTFMEVFKAIAKQDLASYGNVAIRADQKSYSYKQLISSALKISNLLCGSDVKAGNLGGARIGIVAKPSAEFVAGILGTWLSGGVAVPLAVSYPEVELLYVMNNSDTSAILSTEDHSELMQNIANKTSSQFFHLPPVANKSLEKSRDEHSHDGEIDSNRIFLENIQRSSEDPALILYTSGTTGKPKGVVHTHGSIIAQVQSLTKAWEYTSADQFLHCLPLHHIHESFFNLIVLLKVEFLPKFSVRGVWQRWRESYPTEGSKADDAITVFTGVPTIYARLIQGYHAMDPELQAASASAATNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPLPGVQLEVFECRKPDREKEKEYAGEENYGVMLVALPQVTKESFTEEGFFKTGDAVTTDKDGYYIILGRTNADIIKAGGYKLSALEIESHPAVSECCVLGLPHKEYGEIVGAIIVPEENVKQKRDEESKPALSLEELSTWAKDKLAPYKIPTRLIVWDSLPRNAMGKVSKKELKKMLASEQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00305 584 Pfam AMP-binding enzyme 69 478 IPR000873 -
Tsu06g00305 584 Gene3D - 57 472 IPR042099 -
Tsu06g00305 584 PANTHER MALONATE--COA LIGASE-LIKE 32 583 - -
Tsu06g00305 584 ProSitePatterns Putative AMP-binding domain signature. 223 234 IPR020845 -
Tsu06g00305 584 PRINTS AMP-binding signature 218 229 IPR020459 -
Tsu06g00305 584 PRINTS AMP-binding signature 230 238 IPR020459 -
Tsu06g00305 584 Gene3D - 476 584 IPR045851 -
Tsu06g00305 584 PANTHER ACYL-COA SYNTHETASE 32 583 - -
Tsu06g00305 584 CDD MCS 70 578 - -
Tsu06g00305 584 Pfam AMP-binding enzyme C-terminal domain 491 570 IPR025110 -
Tsu06g00305 584 SUPERFAMILY Acetyl-CoA synthetase-like 51 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00305 Tsu-Chr6 2492235 2499539 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00305 218 582 Monolignol Biosynthesis Gene Families AT4G19010 27.461 6.14e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00305 K18660 - gmx:100813324 851.662