Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00284 ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTTGCAGGTGGATTTGGAGGAACTGCTGGTGTAATTTCTGGTTACCCTTTGGATACCCTTAGAATCAGACAACAAAGTGGTCACAATGGTTCTGCTTTTAGCATCCTTAGAAATATGGTTTCTAAAGAAGGTTTTGCTTCTTTGTACCGTGGAATGGGTGCACCATTGGCATCAGTTacttttcagAATGCTGTGGTTTTTCAAACATATGCAGTTCTTTCAAGGGCATGTGACTCATCCGATTCTGCTAAAGACCCTCCATCTTACAAGAGTGTTGCATTAGGCGGAATGGGCACAGGGGGTCTTCAAAGTTTATTGCTTTCCCCTGTGGAGCTGGTTAAAATTCGACTTCAGCTGCAAAACACAAACCAGTCAAAAGAATCAGGAACAAGTCCTTTAAAAGTAGCTAAAAATATATGGAGAAAAGAGGGTTTGCGTGGCATATATCGAGGACTTGGCATCACTGTAATGAGAGATATACCTTCTCATGGTGTTTACTTCTGGACATATGAATACATGAGGGAACAATTGCATCCAGGTTGTAGGAAAAGTGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCAGGAGTAGCGAGTTGGGTTTGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGCTCAAACACCGTCTTCACTAAAATACAACGGTGTTTTTGACTGTATTGTAAAAAGCGTCAAAGAAGAAGGATACCTTGTGTTGTGGCGTGGTTTAGGAACTGCAGTCTCCAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAATTTACACTGAGATTTCTGTTTAACAATGGAAACGTTCAAATTCAGGAAACAATTTAG 912 0.4024 MDFWPEFLASSSGREFVAGGFGGTAGVISGYPLDTLRIRQQSGHNGSAFSILRNMVSKEGFASLYRGMGAPLASVTFQNAVVFQTYAVLSRACDSSDSAKDPPSYKSVALGGMGTGGLQSLLLSPVELVKIRLQLQNTNQSKESGTSPLKVAKNIWRKEGLRGIYRGLGITVMRDIPSHGVYFWTYEYMREQLHPGCRKSGQESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQAQTPSSLKYNGVFDCIVKSVKEEGYLVLWRGLGTAVSRAFVVNGAVFAAYEFTLRFLFNNGNVQIQETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00284 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 293 - -
Tsu06g00284 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Tsu06g00284 303 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 293 - -
Tsu06g00284 303 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Tsu06g00284 303 Gene3D Mitochondrial carrier domain 10 300 IPR023395 -
Tsu06g00284 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Tsu06g00284 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Tsu06g00284 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Tsu06g00284 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Tsu06g00284 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Tsu06g00284 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Tsu06g00284 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Tsu06g00284 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Tsu06g00284 303 Pfam Mitochondrial carrier protein 12 91 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00284 Tsu-Chr6 2370063 2372411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00284 1 294 Antiporters AT1G79900 70.169 2.16e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00284 K15109 - gmx:100812056 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00284 06 2370063 2372411 Tsu06g00284 06 2370063 2372411 ECH