Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00283 ATGGGTCGTGGAAGAATATCTATGGAACTCattcaaaagaagaaatcaagaaagataacatttcaAAAGAGAAAAGATGGATTACTGAAAAAAGTGTATGAACTTTCCACTCTTTGTGATGTTAAAGTATGTTTAATTCTCTATGCTCCCAATTTTGAAGGTCAAGGATATGATGAACCTGAAATATGGCCGGAAGACACAACAAAGGTGCaaaaaatccttcaaaaataCTATGAAACAACAATTGACCGGCGTCCTAAGATCTATGATGTTCAAGTGTATTTCAAAGAAAGGATGAAAAAAATCGAATTTGAGATTTCCAAAGTGCACAAAGATATGTTAAAGACTATGTATCCAACTTGGGATGAATCTTTCAATACTCTTGGAGAGGAACAAATTAAGTTATTTGCTAGCATGTTGGATGTTAAGCTTGCTGCTTGTAATCAAAAGATGAATATACTAAAAGGAGATCTTAAGGGAAAAGCAATAGCTCATGAATCTCACAAGGTTGATAAACCTAATGCTCCCTATTTGATCTCAACTCCAAATAGCTACTTTAGTCTCATGCAAAACAACATGTCTCAAGCACAAATTTACCCTCCATTGATGAATATTTGTGATAAAAACCTCTTAGGATTTTGGCCACTTCAATTGGGACAAAGCTCTCAACCTTCTAGTGCACAAAGTTTCTACCAGGTAGAGTCTGATGAGGGTAGATATACGCAATCTTATTCCTACAATCAAGTCGATGCTAATATTTTATATGATCCAAAAACCAGTACGAaaaagaatgaagctgaaaatTTATCACCATACTATTACAATGGAAATGCAATGACAATGCAATCATATCCTATTGGTATGCATCCTCTTCCTTTCCATAATCTTCCAAACCTACCACCACATGGATATCAACATAATGGATTCTATGATATGGATATTCTTCATGCTCATATGTTCAACAACTACATGGATGAAAGGAAGTGA 987 0.3293 MGRGRISMELIQKKKSRKITFQKRKDGLLKKVYELSTLCDVKVCLILYAPNFEGQGYDEPEIWPEDTTKVQKILQKYYETTIDRRPKIYDVQVYFKERMKKIEFEISKVHKDMLKTMYPTWDESFNTLGEEQIKLFASMLDVKLAACNQKMNILKGDLKGKAIAHESHKVDKPNAPYLISTPNSYFSLMQNNMSQAQIYPPLMNICDKNLLGFWPLQLGQSSQPSSAQSFYQVESDEGRYTQSYSYNQVDANILYDPKTSTKKNEAENLSPYYYNGNAMTMQSYPIGMHPLPFHNLPNLPPHGYQHNGFYDMDILHAHMFNNYMDERK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00283 328 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu06g00283 328 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 228 - -
Tsu06g00283 328 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Tsu06g00283 328 PANTHER MADS BOX PROTEIN 3 228 - -
Tsu06g00283 328 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tsu06g00283 328 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu06g00283 328 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu06g00283 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tsu06g00283 328 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu06g00283 328 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu06g00283 328 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00283 Tsu-Chr6 2362585 2363571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00283 1 126 Type I MADS-box Gene Family AT5G55690 40.945 2.03e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu06g00283 SRF-TF 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00283 - - mtr:MTR_1g114730 412.92