Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00272 atgGCGAGCAGCAACACtggagaagagagaagaagaaggataACAGAGAGAGGTTCTGATCGAATGGCGTTGATAACCGGTCGTATTAATGCACTTCCACCTACAGCTCCTTCCTCGTCTCCAACATATACTCGTCATGGACAATCCATGTCTGTTTCTGCATTTGATTCTCATTTTGATAAAGAAACTTCTAATCCTCGCCATACACGACCTCATTCTGTTGCTTCCGCTGCTTTTGTCTCTGATTTTGATCAAAACAATGATGGTAATGCTGAAGACATCAAGCATGAGGCCTCTGCTGCTTCAAGACTTAAACATCAAGGAGGTTTTAAGTACTCAAATTTTGAACCTAAAAGTGAAGATGAACCTATACTACAAGATTCTAAGACCGAGaaaacaaattcatcatcagAAGCTAAACAATCAGAAGTTAAACAAACAGAATCACTTAACACAAACCAAGCAAAGAAACCTCGTAATTGGCGCCGGCATACATTTTTTTCATCAAGAGAACTAAATTTCTGCATTTTAGCTTCTGAGAACACGCGCGCACTAAGTTCACTGATAATAGCATTGGTCGTTGTTTTCTCTTACGCAATCTTCTCAAAGTGTATTTTTGCTTCAAAGCCTCTCTATATTGTCTTGGTAACCGATGTCACGATTGTGGTTGCTCGCATATACCGCGAAAAGGGTCGAGTTTTGGAAGCAAGTCAAGGAGCCTTGGTCGAGGCTGGTGAAGATGGACGCAATTGGGGTGATGCGGTGAAACTTTTGGAGAGAGATAACATTCTTCTATTCATAAATAACAGCTTTCTCCTTCTTCAACAAGATCTTTTGGTGGTTTTAAGCTTTTACGGACAAATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGCAAGTCAACTACCACCGGACACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAAAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAACGCGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGggatttcattaagaacatgaTTACCGGAACTTCCCAAGCTGATTGTGCTGTTCTGATCATTGATTCCACCACTGGTGGTTTTGAAGCCGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTCAAGCAAATGATCTGCTGTTGCAACAAGATGGATGCCACTACACCCAAGTACTCCAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCGTCCTATTTGAAGAAGGTTGGCTATAACCCAGATAAAATTCCATTTGTTCCCATTTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTGCCActtcaggatgtctacaagattGGAGGAATTGGAACTGTACCTGTGGGACGTGTTGAGACCGGTGTCTTGAAACCTGCAATGGTGGTGACATTTGCCCCTAGTGGACTGACAACTGAAGTCAAGTCTGTGGAGATGCATCATGAAGCTCTCACCGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCTTCAAACTCCAAGGATGACCCAGCTAAGGAGGCCGCTAACTTCACATCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCTCCTGTTCTTGACTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATTGACAGGCGTTCTGGTAAGGAGATTGAGAAACTGCCCAAATTCTTGAAGAATGGTGATGCCGGTATTATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGGCCGTGGAAAAGAAGGAACCCAGCGGAATacctaagaagaagaaatga 2190 0.4228 MASSNTGEERRRRITERGSDRMALITGRINALPPTAPSSSPTYTRHGQSMSVSAFDSHFDKETSNPRHTRPHSVASAAFVSDFDQNNDGNAEDIKHEASAASRLKHQGGFKYSNFEPKSEDEPILQDSKTEKTNSSSEAKQSEVKQTESLNTNQAKKPRNWRRHTFFSSRELNFCILASENTRALSSLIIALVVVFSYAIFSKCIFASKPLYIVLVTDVTIVVARIYREKGRVLEASQGALVEAGEDGRNWGDAVKLLERDNILLFINNSFLLLQQDLLVVLSFYGQMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPAMVVTFAPSGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKLPKFLKNGDAGIIKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGIPKKKK 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00272 729 Pfam Elongation factor Tu domain 2 535 600 IPR004161 GO:0005525
Tsu06g00272 729 MobiDBLite consensus disorder prediction 110 157 - -
Tsu06g00272 729 MobiDBLite consensus disorder prediction 115 138 - -
Tsu06g00272 729 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 292 517 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 Pfam Elongation factor Tu C-terminal domain 609 716 IPR004160 -
Tsu06g00272 729 CDD EF1_alpha_III 610 713 - -
Tsu06g00272 729 MobiDBLite consensus disorder prediction 32 59 - -
Tsu06g00272 729 MobiDBLite consensus disorder prediction 139 156 - -
Tsu06g00272 729 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 348 363 IPR031157 -
Tsu06g00272 729 SUPERFAMILY Translation proteins 518 608 IPR009000 -
Tsu06g00272 729 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 288 724 - -
Tsu06g00272 729 MobiDBLite consensus disorder prediction 1 71 - -
Tsu06g00272 729 Pfam Elongation factor Tu GTP binding domain 293 509 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 CDD EF1_alpha 296 514 - -
Tsu06g00272 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 536 IPR027417 -
Tsu06g00272 729 Gene3D - 282 515 IPR027417 -
Tsu06g00272 729 Gene3D Translation factors 610 717 - -
Tsu06g00272 729 CDD EF1_alpha_II 517 607 - -
Tsu06g00272 729 PANTHER TRANSLATION FACTOR 288 724 - -
Tsu06g00272 729 MobiDBLite consensus disorder prediction 1 19 - -
Tsu06g00272 729 Hamap Elongation factor Tu [tuf]. 289 719 IPR004539 GO:0003746|GO:0005525|GO:0006414
Tsu06g00272 729 Gene3D Translation factors 516 603 - -
Tsu06g00272 729 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 613 716 IPR009001 -
Tsu06g00272 729 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 288 720 IPR004539 GO:0003746|GO:0005525|GO:0006414
Tsu06g00272 729 PRINTS GTP-binding elongation factor signature 355 363 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 PRINTS GTP-binding elongation factor signature 435 444 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 PRINTS GTP-binding elongation factor signature 375 385 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 PRINTS GTP-binding elongation factor signature 391 402 IPR000795 GO:0003924|GO:0005525
Tsu06g00272 729 PRINTS GTP-binding elongation factor signature 296 309 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00272 Tsu-Chr6 2274189 2280184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00272 288 723 Eukaryotic Initiation Factors Gene Family AT5G60390 95.183 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00272 K03231 - thj:104810843 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00272 06 2274189 2280184 Tsu06g00272 06 2274189 2280184 ECH