Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00265 aTGCAGCAAAGAAAATCAACTTTAGGAAGACCTTCTGGAACCGATGGTTCTGATTATTCCTACCGTATGGTAGTTGATTCAAGGTATCAACTTGTTGCAAAGGGGAAGAAACGTCTCTCTGTGTTATTTATCATAGAGGCTTTGTTTCTATTAATTGGAgtgatattttcatttttaccaaGCACAAAAGAAGATACCCAAAATACAGTTGCCATTTCTTCTGTTATTGCTAGTGTTGTTTTGTTGATCATTGCGGATATAGGTAGAAGACGAAGTCGGTCGGGTTTGTTGAGATTATATGCCGTTCTATCTTCCATAGCAATACTTCTCTTCACTGCTTCTCTTGCTAACCAGTATTCCCTGCTGAAGGTTATCCATTATTTTAATAATCGGGGAACAAGCAATGTTGATTTTCCTAGTCTTCAAACCGGTTTGTTGGTTTATCTACTCACACTATCCTTGTTCAAGATTAGTACCATCAAAGCAAACAGTTTTGGATTTTTTCAACTAGTTGCTGTTTCAAGTATCCGAAGTTTTTGGGGACACACTTTAGAAAATAATAAACCAAGAGGAATGGCATTCACAGACATGTCTGCCGCGTCGAGCCTGCGATTAAGTGGGGGTCAAAATCTTCTGTTTCGTACTATCCCTGTGTTACCTAGTCTACGCAAATCTTGCAAGTCCCCTCGAGCAATGAAGGATGGCTCTGCTGGCTATCGATACCCTCCTATGACCAGAAAACCAAGATGGTGGTGGAGAACATTATCATGCATCCCTTACCTCTTACCTTTCCATCAAGTATGGATGTATGCTCAGACAGCATACAATCTTCACCCGTTTCTCGAGAAGTTCGAATTCTATACGTACCCTTTTCTTATGTCAATTGGGAGCCTACCTAGATGGTCTCTCATAGCGTACTTCGTGATTGCGTATCTTACAATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATATCATGTTGCATTAGGAATGTTAATCGAGATAGCCTTGCAGGTTACAGGCATTGTGAGCCGTTGGATGCCGAAAGCAGCCTATTGGGGTAAACTTGGAATGCATTTCTGGACTACTGCATTTTTCGTTTTTCTCTTTACTACCATAGAGTGTATTAGGTGTGCCCTTGTTGGTATGTATGCCGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGAGTAA 1209 0.4003 MQQRKSTLGRPSGTDGSDYSYRMVVDSRYQLVAKGKKRLSVLFIIEALFLLIGVIFSFLPSTKEDTQNTVAISSVIASVVLLIIADIGRRRSRSGLLRLYAVLSSIAILLFTASLANQYSLLKVIHYFNNRGTSNVDFPSLQTGLLVYLLTLSLFKISTIKANSFGFFQLVAVSSIRSFWGHTLENNKPRGMAFTDMSAASSLRLSGGQNLLFRTIPVLPSLRKSCKSPRAMKDGSAGYRYPPMTRKPRWWWRTLSCIPYLLPFHQVWMYAQTAYNLHPFLEKFEFYTYPFLMSIGSLPRWSLIAYFVIAYLTIVRRKEWPHFFRYHVALGMLIEIALQVTGIVSRWMPKAAYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYADIPFVCDAAYIQIPYE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00265 402 Pfam Jagunal, ER re-organisation during oogenesis 10 157 IPR009787 GO:0005789|GO:0007029
Tsu06g00265 402 TIGRFAM 3a0901s05TIC20: chloroplast protein import component, Tic20 family 167 402 IPR005691 -
Tsu06g00265 402 PANTHER HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED 176 402 - -
Tsu06g00265 402 Pfam Chloroplast import apparatus Tic20-like 223 395 IPR005691 -
Tsu06g00265 402 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 176 402 IPR005691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00265 Tsu-Chr6 2214424 2220663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00265 144 398 Chloroplast and Mitochondria Gene Families AT4G03320 33.209 3.34e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00265 - - gmx:100818669 369.777