Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00256 atggcAAGAGAAGGTCTTGGACTTGAAATAACTGAGCTAAGGTTGGGTTTACCATGTGGTGAGCCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTAACGGTGTCGAGGAGGAAAATGGAGGTTCGGATGATCGGAAAATTACCGAGAAGAAGAATCAAGTTGTCGGCTGGCCTCCGGTGTGTTCGTACCGGAAGAAGAATATGAATGAAGGTTCAAAAATGTATATGAAGGTTAGCATGGATGGAGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTGGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAGGAAGCATTGAAGGATGCAGATAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAAAGGTCAGATGCAAAGGGCTTTGGTCTGCAACCAAAAGGATCTTTAAAAAGATTCATATAG 540 0.4241 MAREGLGLEITELRLGLPCGEPQKNEKKRMFSEINGVEEENGGSDDRKITEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00256 179 SUPERFAMILY CAD & PB1 domains 68 160 - -
Tsu06g00256 179 Pfam AUX/IAA family 40 167 IPR033389 -
Tsu06g00256 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 167 - -
Tsu06g00256 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 167 IPR003311 GO:0005634|GO:0006355
Tsu06g00256 179 ProSiteProfiles PB1 domain profile. 75 163 IPR000270 GO:0005515
Tsu06g00256 179 Gene3D - 69 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00256 Tsu-Chr6 2108497 2112235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00256 44 165 B3 DNA Binding Superfamily AT4G23980 34.677 3.47e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu06g00256 AUX_IAA 3.4e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00256 K14484 - gmx:547784 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00256 06 2108497 2112235 Tsu06g00256 06 2108497 2112235 ECH