Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00252 atggccggtggtggtggtggtggtggtagttCACTGACAGGGTTACAAGATCATGTGAAGTTAGCAAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAATAGGCATCTAAACAGTGTTGATGACCCTTTAATTCGTGCGAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTTAAACAATTGGATGCAGATAAAAGGGCGTTTAAAGATAACCCTATTGGAAGACGTCCTCCTTCGCCTCCAATTTCTACTAAATCTTCATTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGATGATCCCGATGTGTGGAGGCCACCTAGTAGAGATACTAGAAGACCCACAAGGGGTGGTCAAGTGGGTAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACGACAAAGACAAGTGCAACTAGCCGCGGCGCAAAGGCTGGTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGGACATCAACTCCGGTAAAGAAAGGCGGTGTTTCTGGAAAGTCTAGCAAGACAGACGCAACTAATGGCGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCCGGAGTGAGATGGGATGATGTTGCTGGTCTTACTGAAGCGAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCAGGAACTGGAAAGACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACAACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGAatggtgcggtgtttgtttgatcTTGCAAGAGCATACGCACCAAGTACAATTTTCATTGATGAAATCGATTCGCTATGCAATGCTAGGGGGGCTTCTGGAGAGCATGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACAGTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGTTGATCCGGATAAATTTGAAAACTGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGACGATTTGACAAACGTCTGCCGTGATGCTTCCTTAAACGGAATGAGACGGAAGATAGCAGGAAAGACTCGCGATGAAATCAAGAATATGTCTAAGgatgaaatttcaaaagatcCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCCGGCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA 1584 0.4179 MAGGGGGGGSSLTGLQDHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDTRRPTRGGQVGNRISQQDSKWARGATTKTSATSRGAKAGGGVKSKVNSGARTSTPVKKGGVSGKSSKTDATNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSPADIERHEKWFHEFGSA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00252 527 ProSitePatterns AAA-protein family signature. 388 407 IPR003960 GO:0005524|GO:0016887
Tsu06g00252 527 MobiDBLite consensus disorder prediction 179 202 - -
Tsu06g00252 527 Pfam ATPase family associated with various cellular activities (AAA) 279 416 IPR003959 GO:0005524|GO:0016887
Tsu06g00252 527 MobiDBLite consensus disorder prediction 203 217 - -
Tsu06g00252 527 MobiDBLite consensus disorder prediction 97 122 - -
Tsu06g00252 527 PANTHER AAA DOMAIN-CONTAINING 11 527 - -
Tsu06g00252 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 524 IPR027417 -
Tsu06g00252 527 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 11 527 - -
Tsu06g00252 527 SMART AAA_5 275 418 IPR003593 -
Tsu06g00252 527 Pfam AAA+ lid domain 438 479 IPR041569 -
Tsu06g00252 527 Gene3D - 237 517 IPR027417 -
Tsu06g00252 527 Pfam Vps4 C terminal oligomerisation domain 480 525 IPR015415 -
Tsu06g00252 527 CDD AAA 273 416 - -
Tsu06g00252 527 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 13 527 IPR028596 GO:0008017|GO:0008568|GO:0051013
Tsu06g00252 527 MobiDBLite consensus disorder prediction 85 219 - -
Tsu06g00252 527 Gene3D - 10 86 - -
Tsu06g00252 527 MobiDBLite consensus disorder prediction 141 167 - -
Tsu06g00252 527 Gene3D - 417 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00252 Tsu-Chr6 2085153 2089340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00252 231 519 Calmodulin-binding Proteins AT3G56690 39.933 1.34e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00252 K07767 - zju:112489859 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00252 06 2085153 2089340 Tsu06g00252 06 2085153 2089340 ECH