Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00250 ATGAGTTGCTCATTTAAGACATTCAACAAACAATTCCCTCTTTTTacttttcatcatcatcataaactCCCTCACCaccactcttcttcttcttctttcatacTTAATTACTCTTACACCCCCAAAATCTCTTCCTCTCTatttcattcatcatcatcacactCATCATCTCAACCTGCTACATTTATGGAGGTCTTCAAAGCAGTTTCTAAGCAAGAACTTGCAGCTCATGGCAGTGTTGCTATCAGAGCTGATCAGAAGAGTTATACTTACAAGCAGCTTATCTCGTCGGTGCATAAGATATCTAATCTCTTGTGTGGAAATGATGTGAAGGGAAATCTTGGTGGAGCTCGAATTGGGATTGTAGCCAAACCGTCTGCTGAATTTGTTGCTGGAGTACTTGCGACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTGGAGCTCCTCTATGTGATGAATAATTCGGATGTGTCTGCCATACTGAGCACCGAAGATCATAGTGAATTAATGCAAAGCATTGCCAGTAAAACCTCTTCTCAGTTTTTTCATATTCCACCTGTTCCTAACAAGTCCTCAGAGAAGAGCAAAGATTCACAAAACGGTGAAAGTAATGCAGACAGAATTTTCCTTGAAAATATTGAAAGATCGAGTGAAGATCCGGCACTGATTTTGTATACTAGCGGGACAACAGGTAAACCCAAGGGAGTTGTTCATACACACAGAAGCATCATTGCTCAGGTCCAAACCTTGACGAAAGCATGGGGATACACATCTGCGGATCAGTTTTTGCATTGTCTACCACTACATCATGTCCATGGGCTTTTCAACGGTTTACTGGCCCCTCTCTACGCAGGTTCCACGGTTGAGTTTTTGCCGAAATTTAGTGTCAGTGGAATTTGGAAGAGATGGCGCGAGTCATATCCAACCGAAGGATCTAAGTCTGAGGATGCTATAACCGTATTCACTGGAGTTCCAACTATGTACACCCGATTAATACAAGGTTATCATGCCATGGATTCTGAGCTGCAAGCCTCATCAGCATCTGGCGCAAGGAACTTGCGTCTAATGATGTGTGGATCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAATCCATCACTGGACATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCAATATCAAATCCATTGAAAGGTGAACGTAAAGCAGGCACTGTTGGCAAACCATTTCCTGGTGTTCAGGTCAAGATTCTTGCAGATGAGGAGCATGAGAGTGAAGGATCTGGAACTGGTGAGCTTTGCGTTAAAAGCCCTTCACTGTTTAAACAATACTGGAAACTTCCCGAGGTAACGAAGGAATCATTTACAGATGATGGATTCTTTAAGACGGGAGATGCAGTCACTACAGATAAAGATGGATATTTCATCATTCTAGGACGTAATAATGCGGATATAATCAAGAACGGTGGCTATAAGCTGTCTGCATTAGAAATCGAATCAGTAATAGTAGAGGTAATTGGCTATCATTTTTTCATCCTATGGTTTATGATTATGATATGA 1578 0.4043 MSCSFKTFNKQFPLFTFHHHHKLPHHHSSSSSFILNYSYTPKISSSLFHSSSSHSSSQPATFMEVFKAVSKQELAAHGSVAIRADQKSYTYKQLISSVHKISNLLCGNDVKGNLGGARIGIVAKPSAEFVAGVLATWFSGGVAVPLALSYPEVELLYVMNNSDVSAILSTEDHSELMQSIASKTSSQFFHIPPVPNKSSEKSKDSQNGESNADRIFLENIERSSEDPALILYTSGTTGKPKGVVHTHRSIIAQVQTLTKAWGYTSADQFLHCLPLHHVHGLFNGLLAPLYAGSTVEFLPKFSVSGIWKRWRESYPTEGSKSEDAITVFTGVPTMYTRLIQGYHAMDSELQASSASGARNLRLMMCGSSALPQPVMQEWESITGHRLLERYGMTEFVMAISNPLKGERKAGTVGKPFPGVQVKILADEEHESEGSGTGELCVKSPSLFKQYWKLPEVTKESFTDDGFFKTGDAVTTDKDGYFIILGRNNADIIKNGGYKLSALEIESVIVEVIGYHFFILWFMIMI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00250 525 SUPERFAMILY Acetyl-CoA synthetase-like 38 510 - -
Tsu06g00250 525 PRINTS AMP-binding signature 237 245 IPR020459 -
Tsu06g00250 525 PRINTS AMP-binding signature 225 236 IPR020459 -
Tsu06g00250 525 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Tsu06g00250 525 PANTHER ACYL-COA SYNTHETASE 22 510 - -
Tsu06g00250 525 Gene3D - 66 486 IPR042099 -
Tsu06g00250 525 CDD MCS 79 510 - -
Tsu06g00250 525 Pfam AMP-binding enzyme 78 488 IPR000873 -
Tsu06g00250 525 PANTHER MALONATE--COA LIGASE-LIKE 22 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00250 Tsu-Chr6 2073648 2080116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00250 225 499 Monolignol Biosynthesis Gene Families AT1G20510 29.577 1.81e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00250 K18660 - gmx:100810130 768.074