Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00241 ATGTTAGACAACAACAACACTGTTACTAATTCCTCTTCTGATACTGCTTTTGCATTATCAGAAAATGGAGGTgctaataacaaaagaaaaagaagaccAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTTTATCACCAAAGACTTTGTTAGAATCTGATAGATATGTTTGTGAGATCTGTAACCAAGGTTTTCAAAGAGACCAGAATCTACAAATGCATAGAAGAAGACACAAAGTACCATGGAaattattgaaaagagaaacaacacaagggttaaaaaaaagggtttttgTTTGTCCAGAACCAAGTTGTTTACATCATGATCCTTGTCATGCACTTGGTGATCTTGTTGGAATTAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGATAAATGTAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACTTGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCACTATAAGAGGGAAACATCAACCAGATTTACAAGCAACAACAATGCAACCTGCATGCTCATCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATATCAGCCCCATTACAAGGACTACCAGTACTTCCAAAACCACCTGATAAACCATCATCAACACCTACCTTATTAACCAATTCAGATATACACAACATACCTTCCACTTCTCATCACCACCATAACTTAGAACTTCAACTCTTATCACCTTCTACTATAAAACCACAAGCagaaaaaccaagttcaaaggatattcaaaactATGAAACAACTCATTTGAAACTTTCAATAGGGAGTAACAATGAATTATCAGATAAACAAAGGAATTATACCTCTTCATTGGAAGTAGCAAGGTTGAAGGAGTTTACTAATGAGGAGTTAAAATTGGCAATGTCAGAAAAGATTTATGCAGAAGAAGCAAGAAAAGAAGCTAAAAGACAAATTGAGATAGCTGAAGTTGAGTTTGAAAATGCTAAAAGAATAAGAAAACAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGTAACACTGTTATGGAAATAACATGTCAAGCTTGTAAACAACAGTTTCAATCTTCAACGTCTGGTGTTCCATCAGAAGAAACATCTATTGTTATGGGTTACATGTCTTCAGCAACCACAGAAGGAGAAGCAGAATGA 1284 0.3318 MLDNNNTVTNSSSDTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPDLQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPSSTPTLLTNSDIHNIPSTSHHHHNLELQLLSPSTIKPQAEKPSSKDIQNYETTHLKLSIGSNNELSDKQRNYTSSLEVARLKEFTNEELKLAMSEKIYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00241 427 MobiDBLite consensus disorder prediction 194 260 - -
Tsu06g00241 427 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tsu06g00241 427 PANTHER OS03G0310200 PROTEIN 1 427 IPR039288 GO:0009630
Tsu06g00241 427 MobiDBLite consensus disorder prediction 400 427 - -
Tsu06g00241 427 Gene3D Classic Zinc Finger 112 184 - -
Tsu06g00241 427 MobiDBLite consensus disorder prediction 400 418 - -
Tsu06g00241 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Tsu06g00241 427 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Tsu06g00241 427 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Tsu06g00241 427 MobiDBLite consensus disorder prediction 239 260 - -
Tsu06g00241 427 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 427 - -
Tsu06g00241 427 SMART c2h2final6 135 162 IPR013087 -
Tsu06g00241 427 SMART c2h2final6 99 129 IPR013087 -
Tsu06g00241 427 SMART c2h2final6 57 79 IPR013087 -
Tsu06g00241 427 Gene3D Classic Zinc Finger 35 100 - -
Tsu06g00241 427 Coils Coil 333 381 - -
Tsu06g00241 427 MobiDBLite consensus disorder prediction 1 22 - -
Tsu06g00241 427 MobiDBLite consensus disorder prediction 194 221 - -
Tsu06g00241 427 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00241 Tsu-Chr6 1995658 1998885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00241 1 427 C2H2 Transcription Factor Family AT2G01940 55.188 2.68e-159 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00241 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00241 K25871 - gmx:100806138 612.068