Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00236 ATGAAGTGCATAAAATCACCTTTTAAAGGAATTGTTAGTGATATAAGAGGAAGAGCACAATGCTATAAAGATGATTGGACTTGTGCTTTATGTTCTGGTATTGGGATATTGGCTCCGACTACCTATATTTTCTTTGCTTCCGCTTTACCTGTAATTGCCTTCGGCGAGCAGCTGAATCGAGACACAGATGGAAGATTAAGCACAGTAGAAACACTAGCTTCTACAGCAATTTGTGGAATGATACATTCAATAATTGGAGGTCAACCACTCCTTATTGTAGGAGTTGCAGAACCCACCATCATCATGTATACCTACTTGTACAACTTTGCCAAAAATCAGGATGGCCTTGGACAAGAACTTTTTTTGGCTTGGGCTGGATgGGTTTGTGTATGGACTTCTCTGTTGTTGTTTCTCCTAGCAATATTCAATGCTGGCAATATCATCAACAGATTTACAAGGGTTGCTGAAGAGCTTTTTGGCATGCTCATTTCAGTCTTGTTCATTCAAGAGGCTATTAAGGGAATGATAAAGGAATTTAGTGCTCCTAAAAATGAAAACTCAATATTAGAGCACAACCAATTTCATTGGCTTTATGTAAATGGCTTATTAGGTATTATATTCACATTTGGCCTTCTTTATACAGCATTGAAGAGCACAAGAGCAAGATCATGGTTATATGGGACAGGTTGGTTGAGAAGCTTCATTGCAGACTATGGTGTGCCTTTCATGGTGGTAGTATGGACAATTGTGTCATTCTCAGTGCCAACAAAAATACCATCTGAAATTCCAAGAAGAATAATTGCTCCACTGGCTTGGGAATCTACATCTTTACACCATTGGGCAGTTATTAAAGACATGGGGAAGGTTTCTCCAACATATATATTTGCTGCTTTTATACCTGCATTGATGGTAGCAGGACTTTACTTCTTTGATCATAGTGTTGCTTCTGGGATGGCACAACAAAAGGAATTCAATCTCAAGAAACCTTCTGCATACCATTATGACATATTCTTACTAGGATTCATGACTTTGATATGTGGACTACTTGGCTTACCACCTTCAAATGGTGTTCTTCCTCAATCACCTATGCACACTAAGAGCCTTGCAGTTCTTAAGGGTCTGATGATGAGAAGAAAGATGGTTGAAAGTGCTAAGGAAAGCATAAAAAAGAAAGCTAGCAACTCTGAAATCTATGGGAAGATGGAAGCAGTGTTTGTAGAAATGGACAGCAGCCCGACTTCTGTGGAAAGAGAATTAGAGAACTTAAAAGATGTTGTCCTAAAAGGTGAGGACAAAGGAGAAAACAAGAAAGATACATTTGACCTTGAGAAGCATATTGATGCATGTTTGCCTGTTAGAGTAAATGAGCAAAGAATGAGTAATCTTTTACAATCAGTCTTTGTTGGAGCATCAGTTTTTGCTATGCCTGTCATAAAAAAGATTCCAACTTCTGTTCTGTGGGGATACTTTGCATATATGGCCATTGATAGTCTTCCTGGTAACCAATTCTGGGAAAGGATATTACTTCTCTTTGTAACACCTAGTAGGTGGTTCAAGTTATTGGAGGGTCCCCATGCTTCTTTTGTGGAATCAGTACCAATTAAATACATAGTCTTCTTCACAATATTCCAATGTGTGTATTTCATGGTTTGTTTTGGAGTAACATGGATTCCAATAGCTGGAATCTTGTTCCCTTTGCCTTTCTTTATACTGATCTTGGTGAGGCAATATATCCTTCCTAAGCTGTTTAGTCCTCATCATCTAAGAGAACTTGATGCAGCTGAATATGAAGAAATTGTTGGTGCTCCAAGACTCTCATTAAGTcAGATGGATTCACCTAGTTTTGGATCAATCGAAGTGTCTGATAGTGAAATATTAGATGAATTAACTACAAGCAGAGGAGAGTTGAAGGTCCGAACTCTAAGCTTTAATGAGGAAAGACATGGTCAACGCAAACCAAAAACCAAACCAATCCTTATGCGGTTAACTGCTTCAATGGGATTCGGCTCGGGTCCTCTAATATGGTTTCGAAAGGGTATTCGTATCCACGATAACCCGGCTCTCGAATATGCTTCACGAGAATGTTCTCATCTTTACCCTCTTTTTATAATCGACCCGCATTATATGAAACCCGATCCTAATGCTTTCTCACCCGGTTCTTCTCGTGCGGGTCTGAACCGAATCAATTTCTTGCTTCAGAGTCTCGGTGACCTCGATGTTAATCTTAAGAAGATTGGTTCGAGATTGTTGATTGTTAAGGGTGATCCTTATGAAGTTCTCATTCGTTGCTTCAAAGAGTGGAACATTGGAAAGTTATGTTTTGAGTATGACACTGATCCATATTATCAGGCTCTGGATATTAAAATCAAGGACTTTGCTCTTGGAGCAGGAATTGAGGTTTTCTCTCCTGTAAGCCACACACTTTTCAATCCAACAGATATTATACAGAAGAACGGAGGGAAGCCGCCGCTTAGTTATCAATCGTTTGTCAAGCTTGCAGGGGAACCTCCATCTCCACTCTCAACCACGTATTCTTCACTTCCTCCGGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCAACCATCAAAGACCTTGGATATGATGATGCTAAACTGGAGGAGTTCTCTCCTTTCAAAGGCGGTGAGTCGGAAGCATTGAAAAAATTAGAAGAATGCATGAAAGACAAGAAGTGGGTAGCAAACTTTGAAAAACCAAAGGGTAATCCATCTGCATTTCTTAAACCAGCAACAACTATTTTATCACCTTACTTAAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAACGCATTCAAGATGTATATAAAAGTTTGCCAAAACATACTTCACCACCTGTGTCTCTTCTAGGACAGTTGTTGTGGCGAGACTTCTTCTACACGGCAGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGATAATAAGATATGCAAGCAGATTCCTTGGAAGGACGATGATAAACTTCTGGAGGCTTGGAGAGATGCTAAGACAGGGTTTCCTTGGATTGATGCCATCATGGTTCAGCTACGCCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCGTGTTTTCTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGACGTCTTTGATAGGCTTCTAATTGATTCAGACTGGGCAATTAATAATGGCAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCTCCAACCACATTTGGTAAGAAGTATGACCCTAATGGTGACTATATTAGGCATTTTCTCCCCGTCTTAAAAGCAGATATGCCCAAGGCGTACATCTATGAACCATGGACTGCTCCTCCAAGCATCCAGGCCAAAGCAAATTGCATAATTGGAAAAGACTACCCAATGCCAGTTGTTTCTCACGACTCTGCAAGTAAAGAGTGCAAAAGGAAAATGGGTGAGGCATATGCATTGAACAAAGAACTGAATGGTTTGGTTAGTGAAGATGATCTGAGAAACTTGAGGAGGAAATTGGATGCTGGTGAAGAGCAAGGAACTAAAGCTAAAAGATCTAGGCAACTGTTAATTGGCTGA 3606 0.3982 MKCIKSPFKGIVSDIRGRAQCYKDDWTCALCSGIGILAPTTYIFFASALPVIAFGEQLNRDTDGRLSTVETLASTAICGMIHSIIGGQPLLIVGVAEPTIIMYTYLYNFAKNQDGLGQELFLAWAGWVCVWTSLLLFLLAIFNAGNIINRFTRVAEELFGMLISVLFIQEAIKGMIKEFSAPKNENSILEHNQFHWLYVNGLLGIIFTFGLLYTALKSTRARSWLYGTGWLRSFIADYGVPFMVVVWTIVSFSVPTKIPSEIPRRIIAPLAWESTSLHHWAVIKDMGKVSPTYIFAAFIPALMVAGLYFFDHSVASGMAQQKEFNLKKPSAYHYDIFLLGFMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKGLMMRRKMVESAKESIKKKASNSEIYGKMEAVFVEMDSSPTSVERELENLKDVVLKGEDKGENKKDTFDLEKHIDACLPVRVNEQRMSNLLQSVFVGASVFAMPVIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWFKLLEGPHASFVESVPIKYIVFFTIFQCVYFMVCFGVTWIPIAGILFPLPFFILILVRQYILPKLFSPHHLRELDAAEYEEIVGAPRLSLSQMDSPSFGSIEVSDSEILDELTTSRGELKVRTLSFNEERHGQRKPKTKPILMRLTASMGFGSGPLIWFRKGIRIHDNPALEYASRECSHLYPLFIIDPHYMKPDPNAFSPGSSRAGLNRINFLLQSLGDLDVNLKKIGSRLLIVKGDPYEVLIRCFKEWNIGKLCFEYDTDPYYQALDIKIKDFALGAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFVKLAGEPPSPLSTTYSSLPPVGHLGSCDISEVPTIKDLGYDDAKLEEFSPFKGGESEALKKLEECMKDKKWVANFEKPKGNPSAFLKPATTILSPYLKFGCLSSRYFYQRIQDVYKSLPKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDRMKDNKICKQIPWKDDDKLLEAWRDAKTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKADMPKAYIYEPWTAPPSIQAKANCIIGKDYPMPVVSHDSASKECKRKMGEAYALNKELNGLVSEDDLRNLRRKLDAGEEQGTKAKRSRQLLIG 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00236 1201 Pfam HCO3- transporter family 7 182 IPR011531 GO:0006820|GO:0016021
Tsu06g00236 1201 Pfam HCO3- transporter family 452 542 IPR011531 GO:0006820|GO:0016021
Tsu06g00236 1201 Pfam HCO3- transporter family 201 372 IPR011531 GO:0006820|GO:0016021
Tsu06g00236 1201 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 975 1200 - -
Tsu06g00236 1201 Gene3D Helical hairpin bin 18 60 - -
Tsu06g00236 1201 Pfam DNA photolyase 673 832 IPR006050 -
Tsu06g00236 1201 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 870 1162 IPR036134 -
Tsu06g00236 1201 PANTHER ANION EXCHANGE PROTEIN 1 655 IPR003020 GO:0005452|GO:0006820|GO:0016020
Tsu06g00236 1201 PANTHER BORON TRANSPORTER 4-RELATED 1 655 - -
Tsu06g00236 1201 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 670 808 IPR006050 -
Tsu06g00236 1201 Gene3D - 806 968 - -
Tsu06g00236 1201 Pfam FAD binding domain of DNA photolyase 959 1156 IPR005101 -
Tsu06g00236 1201 Gene3D HUPs 673 882 IPR014729 -
Tsu06g00236 1201 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 673 852 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00236 Tsu-Chr6 1932858 1943462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00236 5 654 Antiporters AT1G74810 68.892 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00236 K24194 - gmx:100811184 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00236 06 1932858 1943462 Tsu06g00236 06 1932858 1943462 ECH