Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00210 ATGGGTGAATTGAAAGATACTGAGGTTTACGAGGAAGAGCTTATCGATTacgaagaagaagatgaaaaagcTCTTGATTCTACTAAACCCTCTACTGAAACTGTCAAGAAGGGCTACGTTGGGATCCATAGTTCGGGATTTCGGGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCGGGATTTGAGCATCCTTCAGAAGTGCAACACGAGTGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACCGCTGTTTTTGTTCTGTCAACACTTCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGGGAACTAGCTTATCAGATCTGTCACGAAGTTGAAAGATTCAGCACATATCTTCCAGATATTAAAGTTGCTGTTTTCTACGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAGTGTCCCCACATTGTTGTTGGAACACCTGGGAGGATTCTCGCCTTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATgataaacaagtgatgatgtTTTCAGCTACACTCAGCAAAGATATCCGGCCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAGTTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTAGATGCTCTTGACTTCAACCAAGTTGTTATATTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAACAAGTTGCTTGTTGAGTGTAACTTCCCGTCAATATGCATACATTCTGGAATGTCACAAGAAGAAagGTTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAAAGGATTCTCGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATTGAACGTGTTAATATAGTCATCAACTACGACATGCCTGATTCTGCTGATACCTATCTTCATAGGGTAAGTGAttga 1134 0.4004 MGELKDTEVYEEELIDYEEEDEKALDSTKPSTETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVSD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00210 377 SMART ultradead3 64 265 IPR014001 -
Tsu06g00210 377 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 377 IPR001650 -
Tsu06g00210 377 CDD DEADc_DDX39 44 251 - -
Tsu06g00210 377 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Tsu06g00210 377 Gene3D - 258 376 IPR027417 -
Tsu06g00210 377 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 376 - -
Tsu06g00210 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 375 IPR027417 -
Tsu06g00210 377 CDD SF2_C_DEAD 262 375 - -
Tsu06g00210 377 Gene3D - 41 257 IPR027417 -
Tsu06g00210 377 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 376 - -
Tsu06g00210 377 SMART helicmild6 301 377 IPR001650 -
Tsu06g00210 377 Pfam Helicase conserved C-terminal domain 275 375 IPR001650 -
Tsu06g00210 377 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Tsu06g00210 377 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00210 Tsu-Chr6 1752497 1760116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00210 1 376 Eukaryotic Initiation Factors Gene Family AT5G11200 81.340 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00210 K12812 - gmx:100785358 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00210 06 1752497 1760116 Tsu06g00210 06 1752497 1760116 ECH