Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00209 ATGGTGAAATCAAAGAAATTTCGAGGTGTTAGGCAACGCCATTGGGGTTCTTGGGTCTCCGAGATTCGTCATCCTTTATTGAAAAGGAGGGTGTGGCTAGGAACATTTGAGACAGCTGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTCCCTATTTCTGATAACAAGCCAATAACAAATATCAACAACAATAACCAAAAATCCTTTGCAACTTCCTCTTCAAATTccactactactactactaatacATCTTTATCTGCAATTCTAAGTGCAAAACTTAGGAAATGTTGCAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAGAATTCTCACTTTGGAGTGTGGCAAAAAAGAGCTGGCCCTCGTTCGGACTCAAATTGGATCATGATGGTTGAATTGGAACGGAAGAAAACAGAAGAAGATGGTAAAATTGTGCCTAGTTCGGATTCGGAAATAACACCtcccattgttgttgataatgATGATTCAGAGAAGGTCGTAAAACcggaaaatgaagaacaagaagatgaaggaaATGATAATAACAATGGATTGGATGAAGAACAAAGAATTGCACTTCAAATGATAGAAGAACTTCTTAATCATTAA 657 0.3349 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDNKPITNINNNNQKSFATSSSNSTTTTTNTSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKTEEDGKIVPSSDSEITPPIVVDNDDSEKVVKPENEEQEDEGNDNNNGLDEEQRIALQMIEELLNH 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00209 218 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Tsu06g00209 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 218 - -
Tsu06g00209 218 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Tsu06g00209 218 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 MobiDBLite consensus disorder prediction 67 93 - -
Tsu06g00209 218 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 MobiDBLite consensus disorder prediction 155 208 - -
Tsu06g00209 218 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Tsu06g00209 218 PANTHER ETHYLENE RESPONSE FACTOR 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00209 Tsu-Chr6 1743856 1745643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00209 1 217 AP2-EREBP Transcription Factor Family AT1G15360 59.174 2.58e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu06g00209 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00209 - - gmx:100785898 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00209 06 1743856 1745643 Tsu06g00209 06 1743856 1745643 ECH