Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00208 ATGGCACAAATTCATCTTCATGGTACTCTTCATGCTACCATCTATGAGGTTGATAAGCTTAATTCTGGTGGTGGTGGAAATATTTTCAgcatgATCAAGCAAAACATTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTCAACTCTATGCTACCATTGATTTGGAGAAAGCAAGAGTCGGAAGGACAAGGATTATTGAAAAGGAACATACTAATCCAAAATGGTATGAGTCGTTTCACATTTACTGTGCTCATTTGGCTTCAAATATCATATTCACTGTGAAAGATGATAACCCTATTGGTGCGACTTTAATTGGAAGAGCTTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGATGGGTGGAAATTTTGGATGAGGAAAGAAATCCGATAGAAGCGGGTTCAAAGATCCATGTGAAACTGCAATATTTTGATGTTACAAAAGACCGAAGCTGGGCACGAGGCATTCAAAGTGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCGCAGAGGCAAGGATGTAAGGTATCTCTTTACCAAGATGCTCATGTGCCGGATAACTTTGTCCCTAAAATATCACTCTCTGGTGGCAAGACTTACCAGCCTCATAGGTGTTGGGAGGATATTTTCGATGCAATCACTAATGCAAAGCATTTGATATACATTACTGGTTGGTCTGTTTATGCCGAAATTTCGTTGGTCAGGGATTCTAGGAGGCCAAAGGCCGGGGGAGACGCAACAATTGGTGAGCTTCTCAAGAAAAAGGCCGGTGAAGGTGTTAGGGTTTTGATGCTGGTTTGGGATGATAGAACATCGGTCGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCACGACGAAGAAACCGCACAGTTCTTCGAAGGCACTGATGTCCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGTGTCATTCAAGATTTACAAATTTCCACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGAGTTACCTGGTGGAGGGTCAGATAAGCGAAGAATTATGAGTTTTGTTGGGGGTCTTGACCTTTGTGATGGAAGATACGATACTGCGTTCCACTCACTTTTCAGAACCCTTGACACGGCACACCATGATGATTTTCATCAACCCAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCAAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCGATCGCTTGGGATGTTTTGTTCAACTTTGAGCAGCGATGGAGGAAACAAGGTGGGAAGGATATACTTCTCAATCTGAGAGAGCTTGAAGATTCTATTATTCCCCCATCCCCGATAACGTTTCCCGATGATCAGGAGACATGGAATGTTCAGTTGTTTAGATCTATTGACGGCGGAGCTGCTTTCGGGTTCCCAGAAACTCCCGATGATGCTGCAAGAGCCGGTCTTGTTAGTGGAAAAGACAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGCGCCAAGAACTTCATCTATATTGAAAATCAGTATTTCCTCGGAAGCTCTTTTGCTTGGAGTGCTGATGATATTAAGCCTGAAGAAATCGGTGCTTTGCATCTAATCCCAAAGGAGCTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGAGGAAAAATTCACCGTGTACGTTGTGGTTCCAATGTGGCCAGAAGGTGTTCCAGAAAGTGCGTCGGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAGGATATCGTTCAGGCACTCAGGGCCAAGGGAATCGAGGAAGATCCACGGAAATATTTGACATTCTTCTGCCTTGCTAATCGGGAGGTGAAGAAACAGGGAGAGTATGAGCCTTCTGAACAACCAGAACCCGATTCAGATTATGAGAGAGCCCAACAAGCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTCGATGACGAATACATTATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGTTCGAGAGACTCTGAGATAGCTATGGGAGCTTATCAGCCACACCATTTGGCTACAAGACAGCCGGCACGTGGTCAGATCCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCACGACTCTTTCCTTCATCCAGAAAGTGAACAATGTATCAGTAAGGTGAATCAAATTGCTGACAAATATTGGGATCTTTATTCCAACGATTCGCTCGAGCATGACCTTCCTGGACACTTGCTTCGCTATCCAGTTGGAGTTTCTAGTGAAGGAGTGGTTACGGAGCTGCCTGGATTTGAATTCTTCCCTGATACCAAGGCTCGGATTCTCGGCGCCAAAGCTGATTACCTCCCTCCTATCCTCACTActtag 2427 0.4409 MAQIHLHGTLHATIYEVDKLNSGGGGNIFSMIKQNIEETVGIGKGVTQLYATIDLEKARVGRTRIIEKEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDEERNPIEAGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKISLSGGKTYQPHRCWEDIFDAITNAKHLIYITGWSVYAEISLVRDSRRPKAGGDATIGELLKKKAGEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDDGGSVIQDLQISTMFTHHQKIVVVDSELPGGGSDKRRIMSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLNLRELEDSIIPPSPITFPDDQETWNVQLFRSIDGGAAFGFPETPDDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSADDIKPEEIGALHLIPKELSLKIVSKIEAEEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDIVQALRAKGIEEDPRKYLTFFCLANREVKKQGEYEPSEQPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDSEIAMGAYQPHHLATRQPARGQIHGFRMSLWYEHLGMLHDSFLHPESEQCISKVNQIADKYWDLYSNDSLEHDLPGHLLRYPVGVSSEGVVTELPGFEFFPDTKARILGAKADYLPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00208 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Tsu06g00208 808 PANTHER PHOSPHOLIPASE D ALPHA 1 2 808 - -
Tsu06g00208 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Tsu06g00208 808 Gene3D Endonuclease Chain A 199 443 - -
Tsu06g00208 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Tsu06g00208 808 SUPERFAMILY Phospholipase D/nuclease 445 737 - -
Tsu06g00208 808 Gene3D Endonuclease Chain A 477 703 - -
Tsu06g00208 808 SUPERFAMILY Phospholipase D/nuclease 151 442 - -
Tsu06g00208 808 PANTHER PHOSPHOLIPASE D 2 808 IPR015679 -
Tsu06g00208 808 CDD PLDc_pPLDalpha_2 492 701 - -
Tsu06g00208 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Tsu06g00208 808 Gene3D C2 domain 7 159 IPR035892 -
Tsu06g00208 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tsu06g00208 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Tsu06g00208 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Tsu06g00208 808 SMART pld_4 654 681 IPR001736 GO:0003824
Tsu06g00208 808 SMART pld_4 326 364 IPR001736 GO:0003824
Tsu06g00208 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Tsu06g00208 808 CDD C2_plant_PLD 2 148 - -
Tsu06g00208 808 Pfam C2 domain 9 127 IPR000008 -
Tsu06g00208 808 SMART C2_3c 9 124 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00208 Tsu-Chr6 1717153 1721426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00208 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.728 0.0 1410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00208 K01115 - gmx:100786410 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00208 06 1717153 1721426 Tsu02g05555 02 63831687 63836843 ECH
Tsu06g00208 06 1717153 1721426 Tsu06g00208 06 1717153 1721426 ECH
Tsu02g05555 02 63831687 63836843 Tsu06g00208 06 1717153 1721426 PCT