Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00180 ATGAACTCACAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGCCAATAGCTCTGAAGTGTGGGATAGTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTTGGAAGCTTTCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATCACGGTGATGGGCAGGTCTTCTTCTAATGACAAGCTTTTGCTTGCGCAAGCACTACGTAAAGGAGGTGAAGTGGTTGCTGTCACAGGAGATGGCACCAATGATGCCCCTGCATTACATGAGgcAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCTGTTGTAAAGGTTGTCCGCTGGGGCCGATCTGTATATGCCAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTCATTGTTGCCGAGCTTGTAATAACTGTTGTGGCAGCAATGCACAATGCAGTTTGCAAACTTTGA 522 0.4234 MNSQVRMVTGDNLQTAKPIALKCGIVASIEDAVEPNIIEGKVFWKLSEKEREQVAKKITVMGRSSSNDKLLLAQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVIVAELVITVVAAMHNAVCKL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00180 173 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 52 170 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g00180 173 SUPERFAMILY HAD-like 4 163 IPR036412 -
Tsu06g00180 173 Gene3D - 132 168 - -
Tsu06g00180 173 PANTHER CATION TRANSPORTING ATPASE 4 168 - -
Tsu06g00180 173 PRINTS H+-transporting ATPase (proton pump) signature 118 143 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g00180 173 PRINTS H+-transporting ATPase (proton pump) signature 86 102 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g00180 173 Pfam haloacid dehalogenase-like hydrolase 4 100 - -
Tsu06g00180 173 PRINTS P-type cation-transporting ATPase superfamily signature 110 122 - -
Tsu06g00180 173 PRINTS P-type cation-transporting ATPase superfamily signature 1 11 - -
Tsu06g00180 173 PRINTS P-type cation-transporting ATPase superfamily signature 86 105 - -
Tsu06g00180 173 Gene3D - 4 131 IPR023214 -
Tsu06g00180 173 PANTHER CALCIUM-TRANSPORTING ATPASE 4 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00180 Tsu-Chr6 1505508 1506749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00180 4 166 Primary Pumps ATPases AT3G21180 87.730 5.90e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00180 K01537 - gmx:100777845 281.182