Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00166 ATGGAGGATTCATgggaaaattttcattttcacacgGAAATGGAATGTGGTGATGATTATTTGTTGGAAAAGTACAGCGCCGTTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCAGAACAGAGTTTAATGTATTCAGAAAGTGAAAACGGTTCTGTTACCGTTAACATTAACGGCGATGTTGAGGTTGTTGAAAACATGGTTAAAAGTAACAGTTCAAATTCAATTATGTCtcaagaacaagaacaacaagGTTTGAAATCGAAAGAGGTTGTTGTTCCTCGTAGATGTTCTTCACCAACTACATACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAACTGGTAAACGTGATTATTGTTCTAAATCTGATTATTCTAAGAAGAATAAACGGAGTAGTGAAAAAGctgaaattatgaaaataagtaaaactCAAGGGGTGAAGAAAGCAAGAAGTGGTTCTCAGTGTGTTGATCATATAATGGCAGAGAGAAAGAGGAGACAAGAATTGACTGAGAGATTCATTGCACTTTCTGCCACCATTCCTGGCTTGAGCaagACAGACAAAGCTTCAATACTCCGAGCAGCAATTGATTATGTGAAACAGCTTCAAGAACGTGTTCATGAACTAGAAGAGAAACAAGACAAAAATGTTGGTGTCAAATCAGTGATGGTCCTCCACAAAATTAATTCATGTGGaattattaatagtaatattgaaGATACAAATTCTGGTGACACAAATTGTGATGGCGATTGTAACAACAATGTCCTCCCAGAGATTGAAGTAAGAGTTATGGGAAAAGAAGTGCTTATTGAAATTCATTGTGAGAAACAAAATGGAATTGAGCTCAAATTACTTGACCACATTGAAAATCTTCAACTCTTTGTCACTGGTACCAGTGTGTTGCCTTTTGGAAAATCTGCTATTTCCATTACTATTATTGCTCAGATGGGTGATGGGTACAAAGTGACAGTGCATGATCTAGTGAAAAGCATTAGGATTTATTACTTATTGGAATTGGAAAATAAGAAGAACTCCAACTATAAGTAA 1101 0.3351 MEDSWENFHFHTEMECGDDYLLEKYSAVNIDGDDFLREILLQTPEQSLMYSESENGSVTVNINGDVEVVENMVKSNSSNSIMSQEQEQQGLKSKEVVVPRRCSSPTTYILSFDNSTMIPATPEPCVNLETGKRDYCSKSDYSKKNKRSSEKAEIMKISKTQGVKKARSGSQCVDHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQERVHELEEKQDKNVGVKSVMVLHKINSCGIINSNIEDTNSGDTNCDGDCNNNVLPEIEVRVMGKEVLIEIHCEKQNGIELKLLDHIENLQLFVTGTSVLPFGKSAISITIIAQMGDGYKVTVHDLVKSIRIYYLLELENKKNSNYK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00166 366 SMART finulus 176 225 IPR011598 GO:0046983
Tsu06g00166 366 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 352 - -
Tsu06g00166 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Tsu06g00166 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 231 IPR036638 GO:0046983
Tsu06g00166 366 Gene3D - 161 233 IPR036638 GO:0046983
Tsu06g00166 366 Coils Coil 209 229 - -
Tsu06g00166 366 Pfam Helix-loop-helix DNA-binding domain 172 220 IPR011598 GO:0046983
Tsu06g00166 366 PANTHER BHLH TRANSCRIPTION FACTOR 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00166 Tsu-Chr6 1320944 1327242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00166 161 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.361 7.47e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu06g00166 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00166 - - mtr:MTR_4g009540 458.373