Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00165 ATGATGAACATTGAAAACTTCTCACACGACCCTACACCAActccaaccaccaccaccaccttaAACATTCCAAAAAACAACCCACTTCAACAACAAACATCTCTCGAAGGAATCGCCGCTATTGTAGGAGAACAAATCCTCTACGGACCCCACAACACCAAAACGACACAACCCACTTGCGTTTCACACCTCAAAACCAAAAGTacagaacaaacaaaaaacaacaacactaacccaacaacaaacaaaaactacAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCTGAAATACGCGACAGAATCGGTCGGTGTCGTCATTGGTTAGGAACATTTGATACTGCTGAAGAAGCGGCGCGTGCTTATGACGCGGCAGCTAGGCGATTGAGAGGTTCTAAAgcaaaaactaattttaaagtACCTTCTGTTTTGCCTATACCGTTATCACATAACTCGAACGAGTCTTGTTCGAGTTCTGATGGTAACGGTAAGAAAAAAGCTGTGCGGAATAGTGGTAGGAAGTGTTGTGTTGTTAATTCTGTGGGTGAGTTGTTTAGTGGTGTGCCTGAAGTTAGAAGAGAAAGAGattatagtaataataatggGGTTAATGTTGGATTTGGTGGTGGTAGAAATAGTGCTGGAATGGTTGTGTAG 663 0.3695 MMNIENFSHDPTPTPTTTTTLNIPKNNPLQQQTSLEGIAAIVGEQILYGPHNTKTTQPTCVSHLKTKSTEQTKNNNTNPTTNKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKAKTNFKVPSVLPIPLSHNSNESCSSSDGNGKKKAVRNSGRKCCVVNSVGELFSGVPEVRRERDYSNNNGVNVGFGGGRNSAGMVV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00165 220 MobiDBLite consensus disorder prediction 151 171 - -
Tsu06g00165 220 MobiDBLite consensus disorder prediction 1 25 - -
Tsu06g00165 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 28 202 - -
Tsu06g00165 220 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Tsu06g00165 220 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 MobiDBLite consensus disorder prediction 151 167 - -
Tsu06g00165 220 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 MobiDBLite consensus disorder prediction 66 87 - -
Tsu06g00165 220 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Tsu06g00165 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 202 - -
Tsu06g00165 220 CDD AP2 85 142 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Tsu06g00165 220 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00165 Tsu-Chr6 1312055 1312717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00165 7 147 AP2-EREBP Transcription Factor Family AT1G80580 52.482 7.11e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g00165 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00165 - - cam:101490906 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00165 06 1312055 1312717 Tsu06g00165 06 1312055 1312717 ECH