Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00149 ATGGCAAGACCACAACAACGTTATCGAGGTGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGTCACCCTTTATTgaAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCATATGATGAAGCAGCAAGATTAATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAATCCAAATGGACCACAATCATCTTCATCTAAGCTTCTTTCAGCTACTTTAACTGCAAAGTTAAATAAGTGTCACATGGCTTCTCTTTCACTTCAAATGTCCAAACAACAATCACCACCACAAAAAGAGCCACAACATGTTTCATCACAAAGTTTTAATTCTtccattaataataataacacttTTGTTTATGGTAATGACATTGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGAAGGAAATAGTTTTGTTGGTTTTGAAGGTCAACAAGTTGAAGTTTCTAATCAACAATTTCAACCTGTTCTTGAAGATGATCATATTGAACAAATGATTCAAGAGTTGCTTGTTTCTGGTTGTTCAATTGAGATTTGTTCCGTCGGTTCATCTTAG 597 0.3568 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQSPPQKEPQHVSSQSFNSSINNNNTFVYGNDIGGTSGETSLIRWLDEGNSFVGFEGQQVEVSNQQFQPVLEDDHIEQMIQELLVSGCSIEICSVGSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00149 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Tsu06g00149 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Tsu06g00149 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Tsu06g00149 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Tsu06g00149 198 MobiDBLite consensus disorder prediction 96 117 - -
Tsu06g00149 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 194 - -
Tsu06g00149 198 PANTHER ETHYLENE RESPONSE FACTOR 1 194 - -
Tsu06g00149 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Tsu06g00149 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Tsu06g00149 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Tsu06g00149 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00149 Tsu-Chr6 1166924 1168258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00149 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.026 6.60e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g00149 AP2 8.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00149 - - gmx:100777851 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00149 06 1166924 1168258 Tsu06g00149 06 1166924 1168258 ECH