Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00127 ATGACTACCTCCAACGGCCACCACACCGTTACTATCGCCGCGGATCAAAATGACAACAACGACAATCTCCCTCCTTCCAATAACAACCGCCGTGATGATGATGACGCCGAACAAATCGATACTGATGATCCTTTCGACATTGCTCAAACTAAGAATGCTTCTCATGAGACTCTTCGGCGTTGGAGACAAGCAGCACTGGTGCTCAATGCGTCCAGGCGATTTAGATATACTCTGGATTTCAAAGGGGAAGAGGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCCCATGCACAAGTCATAAGAGCTGCACTTCTTTTTAGATTGGCCGGCGAACGTGAGCTAGTGATAAGTCCAGAAGCTACACCCCCACCTCAGACTTCAGTTGGTAACTATGGGGTTGCGTTAGAACAACTTGCTTCGATGTCTAAGGATCAGAATATTTCTGCTTTACAGCAATATGGAGGGGTTAAAGGCCTATCGAATTTACTAAAATCAAATCCAGATAAAGGAATTAGTGGAGATGATGATGATctattgaaaaggaaaaatgcaTTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTACGATGGAGGAAGCATTGCCTTTGCAGTTTTACTCGTTATTGTAGTAACAGCTGTCAGTGATTATCGACAATCTCTGCAATTTCAGAATTTGAATGCAgagaaacaaaatatacaattgGAGGTCATTAGAGGTGGGAGAAcaattaaaatatcaatatttgatATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTAGTAATCACAAGTCACTCACTTGCAATCGATGAATCCAGTATGACGGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGCGTTATGCTGGTAACTGGTGTTGGTATTAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGACACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTGGCAACTTTTATAGGTATAGTTGGGCTTACTGTTGCTGTTTCAGTGCTTGCAGTCCTCTTGGGCAGATACTTTTCTGGCCACACAAATGATTTAGAAGGAAATCCCGAATTTGTTGCCGGAAGGACTAGCATTAGTGATGCAGTTGATGGGGTCATCAAAATTTTTACGATTGCAGTCACAATTGTAGTTGTTGCAGTGCCTGAGGGTCTACCTTTGGCTGTTACTTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGATAAAGCCTTGGTACGAAGGCTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTTGTTGAGGCATATGCTGGGAGGAACAAGCTAAATCCACCGGACGACTCTTCAATGTTGCATCCAGAAGCATTATCTCTGATAAATGAAAGCATTGCACAAAATTCAACTGGAAATGTTTTTATGTCGAAGGATGGTGGAGAGGTAGAGGTGTCAGGATCACCGACGGAGAAGGCCATTCTGTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTATCAGATCTAATTCAACAGTTCTTCACGTCTTTCCGTTCAATTCTGAGAAAAAACGAGGTGGTGTTGCTCTGAAGCGGGTGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTCTTGGAGCATGTACCCAATATTTTGATTCAAACGGTCACGTGCAATCCCTTGAACAAGAGAAGACTTTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGCTGTGTTGCCATTGCATACAGATCATATGATTTAGACAAAGTTCCATCTAATGAGCAGGATTTAGACCAATGGTCCTTACCAGAAGATGAGCTTATTTTACTTGCTATTGTTGGAATCAAGGATCCTTGTCGCCCTAGTGTCAAAGATGCTGTGAAAGTATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTCGGGAGCTTTCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATCACAGTGATGGGCAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTGCGTAAAGGAGGTGAAGTGGTTGCTGTCACAGGAGATGGCACCAATGATGCCCCTGCACTACATGAGgcAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTTGTAAAGGTTGTCCGTTGGGGCCGATCTGTATATGCCAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTCAATGTTGCCGCGCTTGTAATAAATGTTGTGGCAGCAATAAGTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACCGAGCCACCAACAGACCACCTAATGCACAGATCACCAGTTGGTCGAAGGGAACCACTTATAACAAATATCATGTGGAGAAACTTGATCGTACAGGCTCTTTATCAAGTTGTAGTTCTTCTCGTTCTGAACTTCGCCGGTGAAAGTATTCTACCTAAGCAAGATACTAGAGCCCATGGATTTCAagtgaagaatactttgatattCAACGCATTTGTTATGTGCCAAATATTCAATGAGTTCAATGCTCGGAAACCAGATGAAATGAATGTTTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTAACCTTTATACTTCAGGTGAATAGAaaaccttttgtttttgttttcttaaatcttatattaaatattaatgtttGCTTGCTTTATCACCCTACTCCAAATTGTTAG 3159 0.4112 MTTSNGHHTVTIAADQNDNNDNLPPSNNNRRDDDDAEQIDTDDPFDIAQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPEATPPPQTSVGNYGVALEQLASMSKDQNISALQQYGGVKGLSNLLKSNPDKGISGDDDDLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLSEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVVITSHSLAIDESSMTGESKIVHKDHKAPFFMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVSVLAVLLGRYFSGHTNDLEGNPEFVAGRTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGRNKLNPPDDSSMLHPEALSLINESIAQNSTGNVFMSKDGGEVEVSGSPTEKAILSWAVKLGMNFDLIRSNSTVLHVFPFNSEKKRGGVALKRVDSGVHIHWKGAAEIVLGACTQYFDSNGHVQSLEQEKTFFKEAIDDMAARSLRCVAIAYRSYDLDKVPSNEQDLDQWSLPEDELILLAIVGIKDPCRPSVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKVFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVVVLLVLNFAGESILPKQDTRAHGFQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIVGVTFILQVNRKPFVFVFLNLILNINVCLLYHPTPNC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00127 1052 Pfam Cation transporting ATPase, C-terminus 888 1024 IPR006068 -
Tsu06g00127 1052 Pfam haloacid dehalogenase-like hydrolase 493 817 - -
Tsu06g00127 1052 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 700 IPR023299 GO:0000166
Tsu06g00127 1052 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Tsu06g00127 1052 Pfam Ca2+-ATPase N terminal autoinhibitory domain 42 83 IPR024750 GO:0005516
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Tsu06g00127 1052 PRINTS P-type cation-transporting ATPase superfamily signature 827 839 - -
Tsu06g00127 1052 SUPERFAMILY Calcium ATPase, transduction domain A 274 369 IPR008250 -
Tsu06g00127 1052 Gene3D - 53 107 - -
Tsu06g00127 1052 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 143 1024 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu06g00127 1052 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g00127 1052 Gene3D - 493 848 IPR023214 -
Tsu06g00127 1052 CDD P-type_ATPase_Ca_PMCA-like 178 936 - -
Tsu06g00127 1052 Gene3D - 506 703 IPR023299 GO:0000166
Tsu06g00127 1052 PANTHER CALCIUM-TRANSPORTING ATPASE 36 1025 - -
Tsu06g00127 1052 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 434 529 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g00127 1052 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 769 883 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g00127 1052 Gene3D - 176 372 - -
Tsu06g00127 1052 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1024 IPR023298 -
Tsu06g00127 1052 Gene3D - 204 1024 - -
Tsu06g00127 1052 PANTHER CATION TRANSPORTING ATPASE 36 1025 - -
Tsu06g00127 1052 SFLD p-type atpase 478 855 IPR044492 -
Tsu06g00127 1052 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Tsu06g00127 1052 Coils Coil 638 658 - -
Tsu06g00127 1052 SFLD C1.7: P-type atpase like 478 855 - -
Tsu06g00127 1052 Pfam E1-E2 ATPase 273 474 - -
Tsu06g00127 1052 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Tsu06g00127 1052 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Tsu06g00127 1052 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Tsu06g00127 1052 MobiDBLite consensus disorder prediction 1 54 - -
Tsu06g00127 1052 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Tsu06g00127 1052 SUPERFAMILY HAD-like 494 908 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00127 Tsu-Chr6 991544 1006962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00127 2 1024 Primary Pumps ATPases AT3G21180 76.855 0.0 1574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00127 K01537 - gmx:100777143 1720.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00127 06 991544 1006962 Tsu06g00127 06 991544 1006962 ECH