Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00126 ATGGCATTCAATGTTCCACATCTTAATGCGGATGGTTTTGCTCAAGTGCTTCAGCCGGCGGCTAGGAGTCAGTGGACACCTGCTGAGGATCAGCTTCTTGTTGATGGTTTGAATAGCTATCAACATATCGTGGCTCTAACTTCAAAGGTTCAAGCATTGAAAGACGATCCTCGCTTTTCTAATGGCCTTGTAAACAGGTCTGTTGTTGCACTCGAATCAAGGTTTCAAAGATTGAGGCAGAAAAATATGCTCATGGTTGTTCCCGATGGTGCTAACCTTCCACATGGTATTGTGCCACCACCACCAGGTGGTGGTTTGATCATTGTCCCACCAGGCTTTGTTCTGAATCCGCCGCAAGGACCAGATTTGAATGTTAATGGAGATGAAGGACCAAATGAGAATGTTAATGGTGCTGGAAATGTTGGGAATCACCAACTAGGTGATGTGAATTTTAATGGTGATGAAGTACCAAATCAGAATGTTAATGGTGCTGGAAATGTTGGGAATCACCAACAAGGAGCAAATGGGAATGTTAATGGTGCTGGAAATGCTGGGAATCAGCAACAAAGTGTTGGTCCAAATGGTGTTGGAAATGCTGAGGAACAATTTGCTGAAAGGATAGCTAATCTCCTGGTTCCTAGGGTTGCTGCAGTTTTGGTTCCTCAAGTGGTTGAGGGGGTTCTAGCCGGACTTAGAGATTCATTCACTTCCTCCCTCGCTGAGATGGGTGAAGAGGTGAAATCTATTGTTGTTCCAGAATCTGTGTTGAAGAAGCAGAAAAGGGAAGATGAATGGGCTTTGACAAAAaagcaagaatttgaagctGCTAAGAAAAAAAGAGCTGAGAATCGTAAACTGATTTATAGCAGAGCTAATCAGTACTCTCAGGAGTATGAGCAACAGGATAAGGAGTTGATTCGATTGAAACGAGAAGCAAAGCTAAGAGGTGGATTTTATGTTGATCCAGAAGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATCAATGCCATGGATCCCAAGACAAGAAAGATCTTGCAACTATTTCGATTGAGACAGGTTTTCAACGGTGTTTTCCTTAAAGTTAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGataCCCTAACTTGAAGAGTGTAAGGGAACTCATTTATAAGAGAGGTTATGGAAAGCTAGACAGGCAGCGTACTCCTCTCACCAACAACTCCATTATCGAGCAGGGATTGGGAAAGCATGGTATCCTATGCATCGAAGATCTTATTCACGAGATTTTGACCGTTGGACCACATTTTAAGGAGGCAAATAACTTCCTTTGGCCATTCAAGCTCAAGGCTCCTTTGGGAGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAATCGAGAGAATTACATCAATGAGCTCATCAGGAGAATGAATTAA 1458 0.4225 MAFNVPHLNADGFAQVLQPAARSQWTPAEDQLLVDGLNSYQHIVALTSKVQALKDDPRFSNGLVNRSVVALESRFQRLRQKNMLMVVPDGANLPHGIVPPPPGGGLIIVPPGFVLNPPQGPDLNVNGDEGPNENVNGAGNVGNHQLGDVNFNGDEVPNQNVNGAGNVGNHQQGANGNVNGAGNAGNQQQSVGPNGVGNAEEQFAERIANLLVPRVAAVLVPQVVEGVLAGLRDSFTSSLAEMGEEVKSIVVPESVLKKQKREDEWALTKKQEFEAAKKKRAENRKLIYSRANQYSQEYEQQDKELIRLKREAKLRGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQVFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTNNSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00126 485 PANTHER 60S RIBOSOMAL PROTEIN L7 232 485 IPR039699 -
Tsu06g00126 485 Pfam Ribosomal L30 N-terminal domain 251 322 IPR012988 -
Tsu06g00126 485 ProSitePatterns Ribosomal protein L30 signature. 345 377 IPR018038 -
Tsu06g00126 485 Coils Coil 291 311 - -
Tsu06g00126 485 Pfam Ribosomal protein L30p/L7e 327 377 IPR016082 -
Tsu06g00126 485 TIGRFAM uL30_euk: 60S ribosomal protein uL30 252 485 IPR005998 GO:0000463|GO:0003735|GO:0022625
Tsu06g00126 485 CDD Ribosomal_L7_archeal_euk 326 485 IPR035808 -
Tsu06g00126 485 MobiDBLite consensus disorder prediction 165 197 - -
Tsu06g00126 485 Gene3D - 432 485 IPR036919 -
Tsu06g00126 485 Gene3D - 326 431 IPR036919 -
Tsu06g00126 485 MobiDBLite consensus disorder prediction 165 196 - -
Tsu06g00126 485 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 232 485 - -
Tsu06g00126 485 SUPERFAMILY Ribosomal protein L30p/L7e 326 485 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00126 Tsu-Chr6 975357 985955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00126 242 485 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.557 4.69e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00126 K02937 - gmx:100813342 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00126 06 975357 985955 Tsu06g00126 06 975357 985955 ECH