Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00104 ATGGCCAAGAAATCTCAAAAATCTCACAAAACCACTTCTTCATCAACTTCTTCTAATTCTTCTTCTACCACAACCATGGTTAAACGTAAACGTAAAACCATCCCAAGAAACTCACCTCCACAAAGAAGCTCAATTTATAGGGGTGTTACAAGaCATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAGAGCAAAAAAGGAAGACAAGTATATCTAGGAGCatatgatgatgaagaagctgcAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGACAAGAAACAATTCTCAATTTTCAAGTATCAAACTATCAAGAGGAGCTCAAAGAGATGGAAGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGCGTAGCAAGACATCACCACAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATATTTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCAGAGCATATGACATGGCAGCAATAGAGTACAGAGGACTTAATGCCGTTACAAACTTTGACCTTAGCCGTTATATCAATGGGATAGGTCCTAAAATACAAGACAACAATGATGATAACAACCTCAATAATCAAAGTTCTAGCAATAATCAACAGCTAGATCTTAATCAAGAACATGATGTCAGTGCCACATCAGCATCTTCGACACTCAATCATATCTTAAAGTCGTCAAAATTTACAGAAATGATAGAAAAAACATTACCAGACGAAATTGAAGAGAGTTACACTCCACCATCTTCTGAGTCAACCCCTCCACGTCGTACATTTCCCGAAGATAttcaaacaatttttgaaaCACAAGATTTGAGTATCTACACTGAAAATGATGATGACATGATATTTGGTGAGTTAAGCTCAATTGCTGCTccaaatatatttcattttggaCTTGATGCTTGA 1011 0.362 MAKKSQKSHKTTSSSTSSNSSSTTTMVKRKRKTIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQETILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDMAAIEYRGLNAVTNFDLSRYINGIGPKIQDNNDDNNLNNQSSSNNQQLDLNQEHDVSATSASSTLNHILKSSKFTEMIEKTLPDEIEESYTPPSSESTPPRRTFPEDIQTIFETQDLSIYTENDDDMIFGELSSIAAPNIFHFGLDA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00104 336 MobiDBLite consensus disorder prediction 272 292 - -
Tsu06g00104 336 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Tsu06g00104 336 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 MobiDBLite consensus disorder prediction 1 48 - -
Tsu06g00104 336 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 MobiDBLite consensus disorder prediction 7 28 - -
Tsu06g00104 336 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 320 - -
Tsu06g00104 336 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 MobiDBLite consensus disorder prediction 277 292 - -
Tsu06g00104 336 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Tsu06g00104 336 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Tsu06g00104 336 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Tsu06g00104 336 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Tsu06g00104 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00104 Tsu-Chr6 811913 818967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00104 41 255 AP2-EREBP Transcription Factor Family AT5G57390 59.735 7.33e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu06g00104 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00104 K09285 - gmx:100819898 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00104 06 811913 818967 Tsu06g00104 06 811913 818967 ECH