Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu06g00104 | ATGGCCAAGAAATCTCAAAAATCTCACAAAACCACTTCTTCATCAACTTCTTCTAATTCTTCTTCTACCACAACCATGGTTAAACGTAAACGTAAAACCATCCCAAGAAACTCACCTCCACAAAGAAGCTCAATTTATAGGGGTGTTACAAGaCATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAGAGCAAAAAAGGAAGACAAGTATATCTAGGAGCatatgatgatgaagaagctgcAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGACAAGAAACAATTCTCAATTTTCAAGTATCAAACTATCAAGAGGAGCTCAAAGAGATGGAAGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGCGTAGCAAGACATCACCACAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATATTTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCAGAGCATATGACATGGCAGCAATAGAGTACAGAGGACTTAATGCCGTTACAAACTTTGACCTTAGCCGTTATATCAATGGGATAGGTCCTAAAATACAAGACAACAATGATGATAACAACCTCAATAATCAAAGTTCTAGCAATAATCAACAGCTAGATCTTAATCAAGAACATGATGTCAGTGCCACATCAGCATCTTCGACACTCAATCATATCTTAAAGTCGTCAAAATTTACAGAAATGATAGAAAAAACATTACCAGACGAAATTGAAGAGAGTTACACTCCACCATCTTCTGAGTCAACCCCTCCACGTCGTACATTTCCCGAAGATAttcaaacaatttttgaaaCACAAGATTTGAGTATCTACACTGAAAATGATGATGACATGATATTTGGTGAGTTAAGCTCAATTGCTGCTccaaatatatttcattttggaCTTGATGCTTGA | 1011 | 0.362 | MAKKSQKSHKTTSSSTSSNSSSTTTMVKRKRKTIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQETILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDMAAIEYRGLNAVTNFDLSRYINGIGPKIQDNNDDNNLNNQSSSNNQQLDLNQEHDVSATSASSTLNHILKSSKFTEMIEKTLPDEIEESYTPPSSESTPPRRTFPEDIQTIFETQDLSIYTENDDDMIFGELSSIAAPNIFHFGLDA | 336 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu06g00104 | 336 | MobiDBLite | consensus disorder prediction | 272 | 292 | - | - | |
Tsu06g00104 | 336 | SUPERFAMILY | DNA-binding domain | 146 | 207 | IPR016177 | GO:0003677 | |
Tsu06g00104 | 336 | SMART | rav1_2 | 147 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | SMART | rav1_2 | 45 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Tsu06g00104 | 336 | CDD | AP2 | 146 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | MobiDBLite | consensus disorder prediction | 7 | 28 | - | - | |
Tsu06g00104 | 336 | PRINTS | Ethylene responsive element binding protein signature | 187 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | PRINTS | Ethylene responsive element binding protein signature | 46 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 320 | - | - | |
Tsu06g00104 | 336 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
Tsu06g00104 | 336 | Gene3D | AP2/ERF domain | 45 | 113 | IPR036955 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | Gene3D | AP2/ERF domain | 146 | 207 | IPR036955 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | SUPERFAMILY | DNA-binding domain | 44 | 113 | IPR016177 | GO:0003677 | |
Tsu06g00104 | 336 | Pfam | AP2 domain | 45 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | Pfam | AP2 domain | 146 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu06g00104 | 336 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED | 1 | 320 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu06g00104 | Tsu-Chr6 | 811913 | 818967 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu06g00104 | 41 | 255 | AP2-EREBP Transcription Factor Family | AT5G57390 | 59.735 | 7.33e-93 | 282 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Tsu06g00104 | AP2 | 4.6e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu06g00104 | K09285 | - | gmx:100819898 | 419.853 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu06g00104 | 06 | 811913 | 818967 | Tsu06g00104 | 06 | 811913 | 818967 | ECH |