Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00088 ATGAGAGGCGCGTGGCAGGCAGGCGCTGGTTTAACACAAACCATTCAGGCCTTCCTTTCCTACATCAGAGGCAAACAACTAACTCTGCAAAACTATTCATTCTTTCtgttctctctttctttccacacaaacaaatcaatattcatctctctctctctctctctctctctctctaacacacacgcacacacacacacgttCACTCGCTCTTTCCCTTTCCGATTCCACTCTCTATCCACACCATTTGACATGGGGATATATCTGAGTTCGCCGAAAACGGAGAAGGCATCTGAAGATGGTGAGAATGACATGCTTCGATTTGGTTTGTCTTCTATGCAGGGCTGGCGTGCTACTATGGAAGATGCTCATGCAGCTCATCCGTATTTGGACGAATCTACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCGAAGTTTCTACATCAGCAGGTGCTTAGGCATGAAGCTTATGTAGCTGGAGATATAGCCACGTCTTTACAGAAATCTTTTCTCAGAATGGATGACATGATGCGCGGACAAAGAGGATGGAGAGAATTAGCAGTCTTGGGAGATAAAATAGAAAAGTTGTCTGGTATGCTAGAGGGGTTTATATGGTCTCCCAGGGCTAGTGAAACCAATGAACGTGCTGATGAGTGGGCTTTTGAGGAGGGACCCCATTCTGATTTCAGTGGGCCAAACTCTGGAAGCACAGCCTGTGTGGCTGTCATCCGAGGAAAAAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAATTTGTCTAAAGATCACAAGCCTGACCTTGAGGTTGAGAAAGACAGGATTCTGAAAGCTGGTGGTTTCATCCAAGTTGGACGAGTCAATGGAAGTTTGAACTTGGCTAGAgcaattgGAGATATGGAATTCAAGCAGAACAAGTATTTGCCTGCTGAAAAGCAGGTTGTGACTGCTGATCCGGACGTAACGTCAGTCGAGCTTTGCGATGATGATGAGTTTCTTGTGATAGCTTGTGATGGGATATGGGATTGCATGTCCAGCCAACAGCTTGTGGACTTCATACATGGCCAGTTAAAGACAGAGGATAAACTTTCCGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAATATTCCGACTTCAGATGCTTCTGTCACAGACCAGCCTGAGCCATCTGCTCAACCTACTCCAAATCCTCCTGCTCCAGATACATCGGCTCAACCGTCTGAAGCTGGGCAGAAAGTAGAATCGATGTGA 1365 0.4234 MRGAWQAGAGLTQTIQAFLSYIRGKQLTLQNYSFFLFSLSFHTNKSIFISLSLSLSLSNTHAHTHTFTRSFPFRFHSLSTPFDMGIYLSSPKTEKASEDGENDMLRFGLSSMQGWRATMEDAHAAHPYLDESTSYFGVYDGHGGKAVSKFCAKFLHQQVLRHEAYVAGDIATSLQKSFLRMDDMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRASETNERADEWAFEEGPHSDFSGPNSGSTACVAVIRGKKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQVVTADPDVTSVELCDDDEFLVIACDGIWDCMSSQQLVDFIHGQLKTEDKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKNIPTSDASVTDQPEPSAQPTPNPPAPDTSAQPSEAGQKVESM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00088 454 Gene3D - 83 412 IPR036457 -
Tsu06g00088 454 SMART PP2C_4 96 409 IPR001932 -
Tsu06g00088 454 Pfam Protein phosphatase 2C 106 186 IPR001932 -
Tsu06g00088 454 Pfam Protein phosphatase 2C 223 396 IPR001932 -
Tsu06g00088 454 MobiDBLite consensus disorder prediction 416 454 - -
Tsu06g00088 454 SUPERFAMILY PP2C-like 86 414 IPR036457 -
Tsu06g00088 454 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 81 423 - -
Tsu06g00088 454 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Tsu06g00088 454 ProSiteProfiles PPM-type phosphatase domain profile. 106 411 IPR001932 -
Tsu06g00088 454 PANTHER PROTEIN PHOSPHATASE 2C 81 423 IPR015655 GO:0004722|GO:0006470
Tsu06g00088 454 CDD PP2Cc 106 411 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00088 Tsu-Chr6 695555 703474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00088 84 412 PP2C-type Phosphatase Gene Family AT2G25070 77.879 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00088 K17499 - gmx:100776787 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00088 06 695555 703474 Tsu06g00088 06 695555 703474 ECH