Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00080 ATGTGGATGGAAGTTGTATTAGTAATCTTTGTGTTTCCAGATTCAGGGCTCTCTCCTTTTGCTGCTGATCTTCTTGTTAAAGAATGGCATGCTGTTGCTTCATGGACTTGGGATGCACAGGATGAAACGTGTGGGATTTGTAGGATGGCGTTTGACGGATGTTGTCCTGATTGTAAACTTCCTGGGGATGACTGCCCACTCATTTGGGGTGCATGCAATCACGCATTTCATTTGCATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCAATGTGCCGTAGGGAATGGCAATTTAAAGGTTGA 318 0.4403 MWMEVVLVIFVFPDSGLSPFAADLLVKEWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00080 105 CDD RING-H2_APC11 41 103 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Tsu06g00080 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 105 IPR013083 -
Tsu06g00080 105 PANTHER RING BOX 26 104 - -
Tsu06g00080 105 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 26 104 - -
Tsu06g00080 105 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 26 104 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Tsu06g00080 105 ProSiteProfiles Zinc finger RING-type profile. 55 98 IPR001841 -
Tsu06g00080 105 SUPERFAMILY RING/U-box 24 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00080 Tsu-Chr6 606557 610851 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00080 55 98 C3H Transcription Factor Family AT1G72220 41.304 9.49e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00080 K03358 - gmx:100776546 194.897