Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00070 aTGCCCTCAAACATTCTCACAGAAATTGCTAGACCATATTATATTGGAGGTCAAAAGGAGAAATTTGTAAGGTTGGATGATTTTGATTCTAATTTGTCTACGCCATCTAGCTCAAGAGGGATGAAGAAAATAAGATTTAATTTAGATTCATTGCCTATTCCTTTTCGCgAAGTTAAAAAAACAGCTGGTGTTTTTTCGGAAAATGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACAGGTTCTGTGTGGTACTTATTATCCATAGAACGGAATGACACATGCTGGACGAATGCATGTAAAGCAGTTGAAGGGTGTAATACACATTTCTTGTATTGTGGAAGTTCAAGTAAGCATATACGAGGGTATGAAAGTTGGAGAAATGTCAGTGAATCTGTTCTTAAAAGTAAATGCTTTGTTGAAGATGATAGCTCAGCTTTTAATTATGGAATCTTCTCTCAAGCTATTGAGTCTGGTATTGTTTCTTCCGTACAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGTCTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGtgcttttttctcttttgattgGAAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGCTGAACACTCGAGGGGTCGATGAAGAAAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGCATTTAAGGAGAAAACGCAGAaaggaggaggaagaagaataTTTTGAATCTAATTATTATGGAGGAAGTGATGATCCTTCTGAGGCTTTGGTTCCGCATGCTGAAAGTTCGTCAAAATTTGGATTCAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACATCGACTTCCAAGTTCGAGCGACCTGATGAGCATTCCAAAGCCCTCAGAACCTGACTTCAGTGCTCTTGATAATCAAGAGTGA 1176 0.3878 MPSNILTEIARPYYIGGQKEKFVRLDDFDSNLSTPSSSRGMKKIRFNLDSLPIPFREVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLSIERNDTCWTNACKAVEGCNTHFLYCGSSSKHIRGYESWRNVSESVLKSKCFVEDDSSAFNYGIFSQAIESGIVSSVQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRHLRRKRRKEEEEEYFESNYYGGSDDPSEALVPHAESSSKFGFNTTIYASRFAANLRGHRHRLPSSSDLMSIPKPSEPDFSALDNQE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00070 391 Pfam Ion transport protein 54 235 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu06g00070 391 MobiDBLite consensus disorder prediction 367 391 - -
Tsu06g00070 391 SUPERFAMILY Voltage-gated potassium channels 74 271 - -
Tsu06g00070 391 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 305 387 - -
Tsu06g00070 391 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 305 - -
Tsu06g00070 391 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 305 387 - -
Tsu06g00070 391 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 56 305 - -
Tsu06g00070 391 Gene3D Helix hairpin bin 235 299 - -
Tsu06g00070 391 Gene3D - 65 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00070 Tsu-Chr6 544798 549963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00070 304 391 Ion Channels AT1G19780 47.917 4.73e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00070 K05391 - gmx:100810453 450.284