Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00060 ATGgatcaacaaaacaaacaaagtttccaaaatccaaaacacataattttcaacaaatatgaaaTGGGAAAAGTCTTGGGTCAAGGAAACTTTGCAAAGGTTTACCATTGTAGAAGCCTTTCAACAAATGAGAGTGTAGCCACCAAGGTGATAAAGAAAGAGAAGCTAAAAGAAGATAGATTAGTGAAGCAAATCAAGCGTGAAGTTTCAGTTATGCGTCTCGTTCGCCATCCTCATATAGTTGACCTCAAAGAAGTTATGGCtacaaaggaaaaaatatttctaGTGATGGAATATGTAAAAGGAGGTGAACTCTTCGCCAAAGTTGCAaaaggaaaattgaaagaagatgtTGCTAGAAAGTACTTTCAACAGCTTATCAGCGCAGTTGATTTTTGCCACAGCCGCGGTGTCACACACCGTGATTTGAAACCAGAGAATCTTTTATTAGACGAAAATGAAGATCTTAAGGTTTCTGATTTTGGGCTCTCGGCGTTGCCAGAGCAACACCGAGAGGATGGTATGCTTTTAACTCCGTGTGGAACCCCTGCTTACGTGGCACCCGAGGTTTTGAAGAAGAAAGGGTATGATGGTTCTAAGGCTGATATATGGTCTTGTGGGGTTATCCTCTATGCCTTGATTTGTGGATATCTTCCTTTTCAAGGTGAGAATGTTATGAGGATTTATAAAAAGGCTTTTAAAGGCGAATATGAGTTTCCGGAATGGATTTCACCACAAGCTAAGATATTAATTTCCAATCTTCTTGTCGCGGATCCTAAAAAGAGGTATTCAATTGTTGATATTATGAATGATCCTTGGTTTCGAATTGGTTTTGCTAGACCAATTGCGTTTTCCATGAATGATTCGAGTATTGAAGATAACGACAAAGACATCAATATTGATTTCAATGAGGTTGGTGAAGATGATGTTGATGTTCCTGAATTGATAATGGTGAAACCATCTCGTCCTTTTTATAATGCATTTGAGATAATTTCATCGTTGTCACATGGTTTTGATCTTAGGAATTTGTTTGAGACAAGGAAAAAGTTGCCATCAATGTTTATATCAAATCTTTCGGCTTCAACGGTGTTGGAGAAACTTGAGATAATGGCGAAGAAGTTGAACTTTAGGATGACTGGGAAGAAGGAGTTTGTGGCGAGATTTGAGGGGATAAAGGATGGGAGAAAGGGGAAGGTGGCGATGACGATGGAAGTGTTTGGGGTGGCGCCAGAGGTGGCGGTGGTTGAGTTTTCCAAGTGTGGTGGAGACACATTGGAGTATGTTAAGTTTTGTGATGAACAACTAAGACCTTCACTCAAAGATATTGTTTGGAGTTGGCAAGGTGACAATCATTATGATAACAATTCTCAATAG 1374 0.3719 MDQQNKQSFQNPKHIIFNKYEMGKVLGQGNFAKVYHCRSLSTNESVATKVIKKEKLKEDRLVKQIKREVSVMRLVRHPHIVDLKEVMATKEKIFLVMEYVKGGELFAKVAKGKLKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQHREDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALICGYLPFQGENVMRIYKKAFKGEYEFPEWISPQAKILISNLLVADPKKRYSIVDIMNDPWFRIGFARPIAFSMNDSSIEDNDKDINIDFNEVGEDDVDVPELIMVKPSRPFYNAFEIISSLSHGFDLRNLFETRKKLPSMFISNLSASTVLEKLEIMAKKLNFRMTGKKEFVARFEGIKDGRKGKVAMTMEVFGVAPEVAVVEFSKCGGDTLEYVKFCDEQLRPSLKDIVWSWQGDNHYDNNSQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00060 457 PANTHER CBL-INTERACTING PROTEIN KINASE 16 11 454 - -
Tsu06g00060 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Tsu06g00060 457 ProSiteProfiles NAF domain profile. 320 345 IPR018451 GO:0007165
Tsu06g00060 457 CDD CIPK_C 326 440 - -
Tsu06g00060 457 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00060 457 PANTHER - 11 454 - -
Tsu06g00060 457 Gene3D Transferase(Phosphotransferase) domain 1 12 321 - -
Tsu06g00060 457 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Tsu06g00060 457 Gene3D Kinase associated domain 1, KA1 322 445 - -
Tsu06g00060 457 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00060 457 Pfam NAF domain 324 378 IPR004041 GO:0007165
Tsu06g00060 457 SUPERFAMILY Protein kinase-like (PK-like) 16 336 IPR011009 -
Tsu06g00060 457 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00060 Tsu-Chr6 474548 476674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00060 10 454 CBL-interacting serine-threonine protein kinases AT5G25110 59.101 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu06g00060 Pkinase 5.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00060 - - gmx:100812424 708.368