Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00046 ATGTGTGTTGCTCAGCCTCTAGCCGTCGTAACTAACACCAATGCTGTTCGCACCAAGGGCGCTAACCGCTCACGTGCCTCCTCCACTCAACCTTCAGATACAGTTCAAAAGGTATTTGTGCGAGGAGGACAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGAATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCACCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCATATGGCCATAGGTGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTTTATCGCAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 432 0.5069 MCVAQPLAVVTNTNAVRTKGANRSRASSTQPSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIHHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPKPRSMKLER 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00046 143 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 17 136 - -
Tsu06g00046 143 SMART c3hfinal6 59 86 IPR000571 GO:0046872
Tsu06g00046 143 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Tsu06g00046 143 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 85 IPR000571 GO:0046872
Tsu06g00046 143 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 136 IPR045877 GO:0003729
Tsu06g00046 143 SUPERFAMILY CCCH zinc finger 56 91 IPR036855 GO:0046872
Tsu06g00046 143 SUPERFAMILY CCCH zinc finger 93 127 IPR036855 GO:0046872
Tsu06g00046 143 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Tsu06g00046 143 Pfam RNA-binding, Nab2-type zinc finger 111 123 - -
Tsu06g00046 143 Gene3D - 93 129 - -
Tsu06g00046 143 Gene3D - 54 92 - -
Tsu06g00046 143 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00046 Tsu-Chr6 391371 398424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00046 25 138 C3H Transcription Factor Family AT1G68200 68.852 1.79e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu06g00046 zf-CCCH 7.9e-13 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00046 K18753 - gmx:100819250 249.98