Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu06g00043 | ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAGGTGGATTCGGCATCGGCATCAACACGGCCGGCCGCATGCAGTCGAACGCCGGCGCGTTTGCTTCGTTGTACTCTGCTCTGACTAATGAAAATCTTCCACCGCTCGCCGGAAACTGCAGCAACGGCGGTGGCGTTTCGCTTTATCCTTACTCTGACTCTGGAACAGAGTACGACTCGTGCATGATACAGAAGCATCAGGATATGGTAAATCGTCACAGTATGTGTCTCAGTCGCCTCGTGGAGACTTCCAAAGAGGTTGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCCGTGAATAAGGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGACTTCGTTGGAGAACCGATTTGGCGGTGGCGGATCCTCCGGCCAGACGCAATCGATTCCGTTTGATCTGATGCACGGTTTCCATAACTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAgcaataacatcaataataataacaaggaGCTTCAGGAAGTTTCGGATGAGAGTCCAACGAGTGTGATAGACAATAACGGTGTTGAAACGGAGAGGTTTTCACTGCCGAAGAGCATATCTGTGAGATCCAATGGCTACTTGAAGGTTGCTCAGCCTCCAGCCGTCGTAACTAACACCAATGCTGTTCGCACCAAGGGCGCTAACCGCTCACGTGCCTCCTCCACTCAACCTTCAGATACAGTTCAAAAGGTATTTGTGCGAGGAGGACAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGAATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCATATGGCCATAGGTGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTTTATCGCAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA | 1071 | 0.493 | MHNKDVCSPSSKGGFGIGINTAGRMQSNAGAFASLYSALTNENLPPLAGNCSNGGGVSLYPYSDSGTEYDSCMIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQTSLENRFGGGGSSGQTQSIPFDLMHGFHNLNLGDGKENCADWNSNNINNNNKELQEVSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKVAQPPAVVTNTNAVRTKGANRSRASSTQPSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPKPRSMKLER | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu06g00043 | 356 | ProSiteProfiles | Zinc finger C3H1-type profile. | 272 | 300 | IPR000571 | GO:0046872 | |
Tsu06g00043 | 356 | SUPERFAMILY | CCCH zinc finger | 306 | 340 | IPR036855 | GO:0046872 | |
Tsu06g00043 | 356 | SUPERFAMILY | CCCH zinc finger | 269 | 304 | IPR036855 | GO:0046872 | |
Tsu06g00043 | 356 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 273 | 298 | IPR000571 | GO:0046872 | |
Tsu06g00043 | 356 | Gene3D | - | 306 | 342 | - | - | |
Tsu06g00043 | 356 | Gene3D | - | 267 | 305 | - | - | |
Tsu06g00043 | 356 | ProSiteProfiles | Zinc finger C3H1-type profile. | 310 | 338 | IPR000571 | GO:0046872 | |
Tsu06g00043 | 356 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 | 67 | 349 | - | - | |
Tsu06g00043 | 356 | SMART | c3hfinal6 | 310 | 337 | IPR000571 | GO:0046872 | |
Tsu06g00043 | 356 | SMART | c3hfinal6 | 272 | 299 | IPR000571 | GO:0046872 | |
Tsu06g00043 | 356 | Coils | Coil | 91 | 118 | - | - | |
Tsu06g00043 | 356 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 67 | 349 | IPR045877 | GO:0003729 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu06g00043 | Tsu-Chr6 | 374514 | 379434 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu06g00043 | 62 | 351 | C3H Transcription Factor Family | AT1G68200 | 50.671 | 9.96e-84 | 254 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tsu06g00043 | zf-CCCH | 2.9e-12 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu06g00043 | K18753 | - | gmx:100796550 | 508.834 |