Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00043 ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAGGTGGATTCGGCATCGGCATCAACACGGCCGGCCGCATGCAGTCGAACGCCGGCGCGTTTGCTTCGTTGTACTCTGCTCTGACTAATGAAAATCTTCCACCGCTCGCCGGAAACTGCAGCAACGGCGGTGGCGTTTCGCTTTATCCTTACTCTGACTCTGGAACAGAGTACGACTCGTGCATGATACAGAAGCATCAGGATATGGTAAATCGTCACAGTATGTGTCTCAGTCGCCTCGTGGAGACTTCCAAAGAGGTTGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCCGTGAATAAGGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGACTTCGTTGGAGAACCGATTTGGCGGTGGCGGATCCTCCGGCCAGACGCAATCGATTCCGTTTGATCTGATGCACGGTTTCCATAACTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAgcaataacatcaataataataacaaggaGCTTCAGGAAGTTTCGGATGAGAGTCCAACGAGTGTGATAGACAATAACGGTGTTGAAACGGAGAGGTTTTCACTGCCGAAGAGCATATCTGTGAGATCCAATGGCTACTTGAAGGTTGCTCAGCCTCCAGCCGTCGTAACTAACACCAATGCTGTTCGCACCAAGGGCGCTAACCGCTCACGTGCCTCCTCCACTCAACCTTCAGATACAGTTCAAAAGGTATTTGTGCGAGGAGGACAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGAATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCATATGGCCATAGGTGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTTTATCGCAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 1071 0.493 MHNKDVCSPSSKGGFGIGINTAGRMQSNAGAFASLYSALTNENLPPLAGNCSNGGGVSLYPYSDSGTEYDSCMIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQTSLENRFGGGGSSGQTQSIPFDLMHGFHNLNLGDGKENCADWNSNNINNNNKELQEVSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKVAQPPAVVTNTNAVRTKGANRSRASSTQPSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPKPRSMKLER 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00043 356 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Tsu06g00043 356 SUPERFAMILY CCCH zinc finger 306 340 IPR036855 GO:0046872
Tsu06g00043 356 SUPERFAMILY CCCH zinc finger 269 304 IPR036855 GO:0046872
Tsu06g00043 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 298 IPR000571 GO:0046872
Tsu06g00043 356 Gene3D - 306 342 - -
Tsu06g00043 356 Gene3D - 267 305 - -
Tsu06g00043 356 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Tsu06g00043 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 67 349 - -
Tsu06g00043 356 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Tsu06g00043 356 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Tsu06g00043 356 Coils Coil 91 118 - -
Tsu06g00043 356 PANTHER CCCH ZINC FINGER/TIS11-RELATED 67 349 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00043 Tsu-Chr6 374514 379434 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00043 62 351 C3H Transcription Factor Family AT1G68200 50.671 9.96e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu06g00043 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00043 K18753 - gmx:100796550 508.834