Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00042 ATGGAACATGCTATGCTGCCGCGGCACAATTCAATGTCGGCAGCTATCCTCCCTGACGAACTTATTGCAGAAATCTTCTCCTGGCTCCCTGTGAAACTTCTCATTCGATTCAGATGCGTTAACAAATTTTTCAAAACTCTCGTTACTGATCCTCACTTCGTTCAAATGCATCTCAAGAAATCGTCACACAAGCAACTTGCGTTAACATATTATGAGGATCGTTGGAATTCCTGTCTGGTACCTCATTCCATTCCCGGTTTACTTCGATACAAGTTTACCATGTTTCATGACGATCCTTACTATCCATTGGACCATTATTCGCGGATTGTTGGTTCATGCAATGGATTGCTCTTGATTCAAATACAAGCAATTCCCCCGGCTCTCCAAGGAAAAGATGTGATTGGACTTGCCCAAACCGGTTCTGGTAAAACTGCCGCTTTTGCTCTTCCTATATTGCATGCACTCTTACAAGACCCAAACCCTTTTTTCGCGTGTGTGTTGTCTCCCACAAGgGAGCTTGCTATTCAAATTAAAGAACAGTTTGAAGCTCTAGGTTCTGTAATTAAGGTCAAGTGTTCTGTGCTTATTGGAGGGTTTCCCATGGAAAAACAATCCGTCAACTTAGCAACGAAGCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTTGGTAAATTAAAATACTTGGTCTTAGATGAAGCAGACAGGTTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGCAAGCGTAGGACGTTCCTTTTTTCTGCTACAATGACAAAGAAGGTCGAGAGGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGATGCATCGATCAAGTATTCTACTGCGAACACACTGAAGCAACAATACCGTTTCGTGCCAGCAAAACACAAGGATTGCTACCTCGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATGCAACTCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAATCAGCTAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTCCTTTGTACCGACGTAGTTAGTAGGGGACTGGATATTCCAGAAGTAGATATGGTGATTAACTATGATATTCCCACAAACCCCAAAGATTCTATACATCGTGTGGGAAGGACTGCTCGGGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTAGAGTGGCACATTCAGACAGAGAAGCTTATAGGCAAGAAGCTACTAGAGTATCCTGCAAAAGAAGAGGAAGTTTTGCTTTTGGAAAAGCGTGTTAGTGAGGCCAAAAGATTAGCTGTAACGaAAATGAAGGGAACTGGAGGGAAGAATAGTCTTTGGTCCGATTCAGAAGAGGTGGAGGATACTGAGACATACTTTGGTCAGAAAGATAAAAGATCGTCTAAGAAGTttagaagaaaataa 1563 0.421 MEHAMLPRHNSMSAAILPDELIAEIFSWLPVKLLIRFRCVNKFFKTLVTDPHFVQMHLKKSSHKQLALTYYEDRWNSCLVPHSIPGLLRYKFTMFHDDPYYPLDHYSRIVGSCNGLLLIQIQAIPPALQGKDVIGLAQTGSGKTAAFALPILHALLQDPNPFFACVLSPTRELAIQIKEQFEALGSVIKVKCSVLIGGFPMEKQSVNLATKPHIIVGTPGRVLDHLKNTKGFSLGKLKYLVLDEADRLLNEDFEESLNEILGMIPRKRRTFLFSATMTKKVERLQRVCLRNPVKIDASIKYSTANTLKQQYRFVPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMNQLKRLGALNKFKSGDCNILLCTDVVSRGLDIPEVDMVINYDIPTNPKDSIHRVGRTARAGRSGVAISLVNQYELEWHIQTEKLIGKKLLEYPAKEEEVLLLEKRVSEAKRLAVTKMKGTGGKNSLWSDSEEVEDTETYFGQKDKRSSKKFRRK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00042 520 MobiDBLite consensus disorder prediction 485 520 - -
Tsu06g00042 520 ProSiteProfiles F-box domain profile. 11 56 IPR001810 GO:0005515
Tsu06g00042 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 466 IPR001650 -
Tsu06g00042 520 PANTHER RNA HELICASE 119 509 - -
Tsu06g00042 520 Pfam Helicase conserved C-terminal domain 322 427 IPR001650 -
Tsu06g00042 520 Pfam F-box domain 17 53 IPR001810 GO:0005515
Tsu06g00042 520 SUPERFAMILY F-box domain 13 70 IPR036047 GO:0005515
Tsu06g00042 520 Gene3D - 1 78 - -
Tsu06g00042 520 Gene3D - 112 298 IPR027417 -
Tsu06g00042 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 446 IPR027417 -
Tsu06g00042 520 SMART fbox_2 17 56 IPR001810 GO:0005515
Tsu06g00042 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 295 IPR014001 -
Tsu06g00042 520 Pfam DEAD/DEAH box helicase 119 284 IPR011545 GO:0003676|GO:0005524
Tsu06g00042 520 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Tsu06g00042 520 Gene3D - 301 472 IPR027417 -
Tsu06g00042 520 SMART helicmild6 346 427 IPR001650 -
Tsu06g00042 520 SMART ultradead3 112 311 IPR014001 -
Tsu06g00042 520 PANTHER BNAC02G41920D PROTEIN 119 509 - -
Tsu06g00042 520 CDD SF2_C_DEAD 307 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00042 Tsu-Chr6 361677 372534 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00042 119 466 Eukaryotic Initiation Factors Gene Family AT1G72730 33.238 1.66e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00042 K14777 - gmx:100775796 624.78