Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00041 ATGTCAGGTGAGGAAGCTGTTGCTGTAGCTGAGCCTGTTGCCATTGCCGCTGCTGGAGTTCCAGGCGAGCCAATGGACATCATGACTGCCTTGCAACTTGTGCTTAGGAAGTCTTTGGCTTACGGTGGTCTTGCACGTGGTCTCCACGAAGGTGCAAAAGTAATTGAGAAGCATGCTGGACAACTCTGTGTTCTTGCAGAGGATTGTGATCAACCTGACTATGTTAAACTTGTCAAGGCTCTTTGTGCCGAGCACAATGTTAGTCTGCTGACAGTTCCTAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAGGGAAAAGCTAGGAAAGTAACTGGCTGCTCTTGTGTTGTTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCACGTGAAAGCTCAATGA 435 0.4782 MSGEEAVAVAEPVAIAAAGVPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00041 144 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 Gene3D - 12 144 IPR029064 -
Tsu06g00041 144 SUPERFAMILY L30e-like 24 142 IPR029064 -
Tsu06g00041 144 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
Tsu06g00041 144 PANTHER 40S RIBOSOMAL PROTEIN S12 1 144 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu06g00041 144 PANTHER 40S RIBOSOMAL PROTEIN S12 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00041 Tsu-Chr6 358532 360430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00041 1 144 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 68.750 4.49e-65 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00041 K02951 - gmx:100786733 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00041 06 358532 360430 Tsu06g00041 06 358532 360430 ECH