Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00034 ATGCACAAAGCTTTTATTGTTGTTACAACATTTACAACAAACTTCATCTTTCTTGTAGTTAAACCAACCTTTGATAACTACAATACTAAGCTTTGTACTtgcattatatttcttaattttcacATGAATCACCTAAAGCCAAAATCATATCCATCTGAAAATTTGAACTTTCCATGCCTAGAAACTTCTATGGatacaaaacacaaaaatgaaTCATCTCCTCAACTTGTACTTGATCTAAGTCTCTCTAGCAAAGATTCttgtgatgatgaatcaaagccGGAACTCAACCTTCTCAATTGTTTCCATTCAAATTTATCAGAAAGCTCTTCAGAATCTAGTCATGAACCAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTATTGTCAGAGAAAATTTTATAGTTCTCAAGCACTCGGAGGACACCAGAATGCACATAAGCGCGAAAGAACTTTAGCGCGAAGAGGCTATACAACTAGCATGTCTTCTTCTATGTCTTCTTATGGCTTATGCAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCTTTTATGGATTTTGTTCAAATGGCCAAAATGGTTGGAAAAGACCAAATTTTGATTCACAGCATGCAATTAGAAAGCTTCCATCTGGAAATTTTCATGTGAGGAATGAAACTGAACCTTCCTTTGGTAGTAGCATTTCAAAGGTAGCCATGTTTCCAAAAGGGTTGGTGAATGAAGGATTTGCATCGCCCCTGCGCAAGGATGACACACACAAATCCAAAAGTTACTTATTGGATAAAAGCACTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAATCTTGACTTGTCTCTTAAGCTCTAA 879 0.339 MHKAFIVVTTFTTNFIFLVVKPTFDNYNTKLCTCIIFLNFHMNHLKPKSYPSENLNFPCLETSMDTKHKNESSPQLVLDLSLSSKDSCDDESKPELNLLNCFHSNLSESSSESSHEPNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMSSSMSSYGLCNKSLGIQVHSMINKPSYQTPFYGFCSNGQNGWKRPNFDSQHAIRKLPSGNFHVRNETEPSFGSSISKVAMFPKGLVNEGFASPLRKDDTHKSKSYLLDKSTSHLKSKQEKLQNLDLSLKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00034 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Tsu06g00034 292 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 56 292 - -
Tsu06g00034 292 SUPERFAMILY beta-beta-alpha zinc fingers 122 152 IPR036236 -
Tsu06g00034 292 Gene3D Classic Zinc Finger 103 174 - -
Tsu06g00034 292 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 292 IPR044246 GO:0009788
Tsu06g00034 292 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00034 Tsu-Chr6 316504 317629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00034 33 292 C2H2 Transcription Factor Family AT5G10970 35.273 3.60e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00034 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00034 - - mtr:MTR_4g006575 329.717