Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00021 AtgagaagaaaaaGTATCTCCCTCAAGAAGATCCATCTTTCTCGCCAAACTGACAGAACCCGAGTATGGAAGACAATATATTTTGATGTTGAAAATGGCACATTCATTCTTGTGTATATTACATCattTTTAAGATGCCATGCTGGTTCCTTGTTTTGTATGGAGCTTATATCTAAAGTTCGCAGTCCATTTATTGTGGAGTATAAAGATTCTAGGGTAGAAAAGGGCTGTTTTGTATGTATTATCATCAGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAATAGCATTAATTTTTCTGAAGAGGTAGGTTGGTCACTCTTGCCGCAACTTGATTCACTTAAACTCTGCAAATGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGTGATGTCAAGTGTTCGAATATATTCTTGACAAAAGATCAAGATATACGTTTAGATAAATGGCCTTACTCACTTTATTCTCACACTGCTCTTGGACTTAATTAA 528 0.3523 MRRKSISLKKIHLSRQTDRTRVWKTIYFDVENGTFILVYITSFLRCHAGSLFCMELISKVRSPFIVEYKDSRVEKGCFVCIIISYCEGGDMAEAIKKANSINFSEEVGWSLLPQLDSLKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLDKWPYSLYSHTALGLN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00021 175 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 53 161 - -
Tsu06g00021 175 Gene3D Transferase(Phosphotransferase) domain 1 13 160 - -
Tsu06g00021 175 PANTHER SERINE/THREONINE-KINASE NEK4 53 161 - -
Tsu06g00021 175 Pfam Protein kinase domain 55 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00021 175 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Tsu06g00021 175 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00021 175 SUPERFAMILY Protein kinase-like (PK-like) 53 159 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00021 Tsu-Chr6 250771 252913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00021 54 159 MAP Kinase Kinase Kinase Kinase AT1G53165 28.302 1.91e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu06g00021 Pkinase 9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00021 K08857 - gmx:100805201 180.259