Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00020 ATGATCTTGCTTCCTCAGTGGATTGTTGGTACTACAAGTTATATTTTCCCTGAGCTTCTTGCCGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTCGGATGTTGTGTTTATGAAATGGCTGCTCACAGGCCAGCTTTTAAAGCTTTTTATCTCCACTGCCAACTATGTACTCTAGTGCTTTCTGAGGGCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTAA 231 0.4113 MILLPQWIVGTTSYIFPELLADIPYGSKSDIWSFGCCVYEMAAHRPAFKAFYLHCQLCTLVLSEGLLKVCCGKIQS 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00020 76 Gene3D Transferase(Phosphotransferase) domain 1 5 69 - -
Tsu06g00020 76 Pfam Protein kinase domain 8 49 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00020 76 PANTHER SERINE/THREONINE-KINASE NEK4 8 54 - -
Tsu06g00020 76 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00020 76 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 54 - -
Tsu06g00020 76 SUPERFAMILY Protein kinase-like (PK-like) 7 59 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00020 Tsu-Chr6 249344 250661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00020 8 48 MAP Kinase Kinase Kinase AT3G50310 43.902 6.23e-07 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu06g00020 Pkinase 5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00020 K08857 - fve:101305620 86.6557