Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu06g00012 | ATGCAATTAGTTTCAAACACTGAcaaggatgatgatgaagaatgtTCAGAATGCCAACCCATCTTGAATCACCAAGACTCCTCCTCCTTTTCCTGTGAAATTATTCCTGCCAACACTGATGATGATATAGAGAATGTTCGCGTTGACGACTCTTCTCATCTTCTAAATGAAGATCACCCACAATGCCGAATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACGCAAAAGTATGTCCACAGATCATGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATCGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATgcattcattttcatcattgttCAATTGGTTGTTGCTTTCTTGGGAGTGCTTATTTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTTGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTTGAAGACCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG | 750 | 0.3893 | MQLVSNTDKDDDEECSECQPILNHQDSSSFSCEIIPANTDDDIENVRVDDSSHLLNEDHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu06g00012 | 249 | Pfam | RING-variant domain | 62 | 109 | IPR011016 | GO:0008270 | |
Tsu06g00012 | 249 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 248 | - | - | |
Tsu06g00012 | 249 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 54 | 116 | IPR011016 | GO:0008270 | |
Tsu06g00012 | 249 | SMART | ringv_2 | 61 | 110 | IPR011016 | GO:0008270 | |
Tsu06g00012 | 249 | SUPERFAMILY | RING/U-box | 57 | 113 | - | - | |
Tsu06g00012 | 249 | CDD | RING_CH-C4HC3_MARCH | 62 | 110 | - | - | |
Tsu06g00012 | 249 | PANTHER | OS02G0132300 PROTEIN | 2 | 248 | - | - | |
Tsu06g00012 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 114 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu06g00012 | Tsu-Chr6 | 140434 | 143635 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu06g00012 | 1 | 208 | C3H Transcription Factor Family | AT1G50440 | 61.290 | 2.79e-89 | 262 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu06g00012 | - | - | gmx:100789593 | 461.455 |