Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00012 ATGCAATTAGTTTCAAACACTGAcaaggatgatgatgaagaatgtTCAGAATGCCAACCCATCTTGAATCACCAAGACTCCTCCTCCTTTTCCTGTGAAATTATTCCTGCCAACACTGATGATGATATAGAGAATGTTCGCGTTGACGACTCTTCTCATCTTCTAAATGAAGATCACCCACAATGCCGAATATGCCTTGATCTTGGAGGAGAAGACTTAATTGCCCCTTGCCATTGCAAAGGTACGCAAAAGTATGTCCACAGATCATGTCTGGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGAGCAAATGTCCCAAAAGATCGGTGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATgcattcattttcatcattgttCAATTGGTTGTTGCTTTCTTGGGAGTGCTTATTTACAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTTGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCGATAATATGTGGCCAAAGAATCAATGAACGCCACTACCATGTTCTTGCGAAACAAGAACTGACAAAGGAATATGTGGTTGAAGACCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 750 0.3893 MQLVSNTDKDDDEECSECQPILNHQDSSSFSCEIIPANTDDDIENVRVDDSSHLLNEDHPQCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00012 249 Pfam RING-variant domain 62 109 IPR011016 GO:0008270
Tsu06g00012 249 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 248 - -
Tsu06g00012 249 ProSiteProfiles Zinc finger RING-CH-type profile. 54 116 IPR011016 GO:0008270
Tsu06g00012 249 SMART ringv_2 61 110 IPR011016 GO:0008270
Tsu06g00012 249 SUPERFAMILY RING/U-box 57 113 - -
Tsu06g00012 249 CDD RING_CH-C4HC3_MARCH 62 110 - -
Tsu06g00012 249 PANTHER OS02G0132300 PROTEIN 2 248 - -
Tsu06g00012 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00012 Tsu-Chr6 140434 143635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00012 1 208 C3H Transcription Factor Family AT1G50440 61.290 2.79e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00012 - - gmx:100789593 461.455