Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00011 ATGGGCGCGCGCTCTAATTCGATTGTGCGCGCACCTGCAGcatttaataataacaataataataatgtcaaGGCCTTGGTTGTTTTTATGGTATTATTACTACTTTCATGCACAAGCATGTCAATGCCACCTTCGGATGCTGAGGCTCTATTGAAATTCAAGGGTTCATTAACAAATGCGGTGTCCCTCAGCAGTTGGGATCCATCCATAAACCCAAAACCACCTTGCACCGCAAACATTTCCAATTGGGTGGGCTTGTTTTGCTTGAATAACAGGGTGTTGGGATTACGCCTTGAGAGCATGGGGTTAACCGGAAATATGGAATTGGAATCTCTTTCTTCAATGCCGATGTTGCGGATGGTTAGTCTGATGAACAATACCTTTGTGGGTCCCTTGCCCAATATCAAGATGTTGCCCCATTTGAGGTCTATCTATTTGTCCTATAATCATTTCTCAGGACAGATACCTGACGATGCATTTACGGGTATGCCTAGGTTGAGGAAAGTTTATTTGTCTAATAATGAGTTCAGCGGTAAAATTCCATCCTCTCTCGCTATCTTGCCTACTCTCCTCGTCCTCAGGCTTGACGCAAACAAGTTTCAAGGTGAGATCCCCAATTTTCATCACAAGAATAATTTGAAGATTATCAACTTCTCTAACAATAACTTAGAGGGTCCAATCCCACCTACTCTAAGAACCTTCGAAGCCTCCTCTTTTAGGGGAAACCCACTTCTATGCGGGCCTCCTTTGACGAATAGTTGTCAATTTGTAAATCCAACAATGCTTGTTATGAAAACTTTACTTATTGTGATCATGATAGCCTTTATAGTAGCCATTGTGGTTTCAATATTGGCCATCTCCCGCTTGAGGTCCCAAAAGAAGTTAAACGAACAACATTATTCTACAGCCTCAAAATTCCATACACAAGCATCTAGCAAATATGTTAAGCCTCCTCCAGTTTATGTGAAAACCAAAAGTTTGGCTGAACACTATGATCCTAGAAGTCCTAAGCCAGACCAGTACAATCATGGTCATTCCAAAAAGGAAAAAGGGGAACAAGGCAAGCTTATATTTCTTAGGACGGATGGGCTCACATTTGATTTACAGGATTTACTAAGGGCATCCGCTGAAATTCTAGGAAGTGCCTCATTCGGTTCATCCTACAAAGCTGTGATTTTGGACGGCCAAGCTGTAGTTGTTGTCAAGAGGTACAAGCAAATGAACAATGTGCAAAGAGAAGAGTTCCACGAGCATATGAGAAGGCTAGGAAACCTCAGCCATCCCAATATTCTACCTCTCCTTTCTTATTATtatagaagagaagaaaaacttTTGATCTCTTCCTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGTAACCACAACTACCAGAAGCCGGGACTTAATTGGGTAACCCGTTTGAAAATCGTGAAAGGTGTAGCGAGGGGTTTGTCATATCTATATAGTGCACTCCCAAGTGTGATTGTGCCTCATGGTCATCTAAAATCTTCCAATATACTTTTAGATGAATCCTTTGAGCCTCTTCTCACTGATTATGCGCTCAGTCCTTTGATCAATCTTGACCACGCCCAACAAATCATCATGCCTTACAAATCCCCAGAGTATGCTCAACTTGGGCGCATTACAAAGAAAACTGATGTGTGGAGTTTTGGGATTCTAATATTGGAGATTCTGACTGGTAAATTCCCAGAAAACTATATTACATCAAGGCATAATAGTGATTCAGACTTAGCGAGTTGGGTAAATATGATGATTACCGAGAAGCGCACAAGTGATGTATTTGACGTGGAGATGGGAGGAGTTGGTACTAGTAAAGCTGAATTGCTCAAACTATTAAAGATTGGACTCAGTTGTTGTGAGGAGAATGTGGAAAGAAGGTTGGAAATGAAAGAGGCTCTGGAGCAGATTGAAGACTTGAATGAGGGTCAAACAAGTAGTAGTACTAATACCGATCATCATAATTTTGGAGAATACTCTTCCTCCCTTGTCACCACTACTAATACTGAAAGGGATGCTTACAGAGCTGTGTGA 2058 0.4086 MGARSNSIVRAPAAFNNNNNNNVKALVVFMVLLLLSCTSMSMPPSDAEALLKFKGSLTNAVSLSSWDPSINPKPPCTANISNWVGLFCLNNRVLGLRLESMGLTGNMELESLSSMPMLRMVSLMNNTFVGPLPNIKMLPHLRSIYLSYNHFSGQIPDDAFTGMPRLRKVYLSNNEFSGKIPSSLAILPTLLVLRLDANKFQGEIPNFHHKNNLKIINFSNNNLEGPIPPTLRTFEASSFRGNPLLCGPPLTNSCQFVNPTMLVMKTLLIVIMIAFIVAIVVSILAISRLRSQKKLNEQHYSTASKFHTQASSKYVKPPPVYVKTKSLAEHYDPRSPKPDQYNHGHSKKEKGEQGKLIFLRTDGLTFDLQDLLRASAEILGSASFGSSYKAVILDGQAVVVVKRYKQMNNVQREEFHEHMRRLGNLSHPNILPLLSYYYRREEKLLISSFVHNGCLASHLHGNHNYQKPGLNWVTRLKIVKGVARGLSYLYSALPSVIVPHGHLKSSNILLDESFEPLLTDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITSRHNSDSDLASWVNMMITEKRTSDVFDVEMGGVGTSKAELLKLLKIGLSCCEENVERRLEMKEALEQIEDLNEGQTSSSTNTDHHNFGEYSSSLVTTTNTERDAYRAV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00011 685 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 659 - -
Tsu06g00011 685 Gene3D Ribonuclease Inhibitor 44 208 IPR032675 -
Tsu06g00011 685 MobiDBLite consensus disorder prediction 328 350 - -
Tsu06g00011 685 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 21 659 - -
Tsu06g00011 685 Gene3D Transferase(Phosphotransferase) domain 1 450 671 - -
Tsu06g00011 685 Pfam Protein tyrosine and serine/threonine kinase 377 641 IPR001245 GO:0004672|GO:0006468
Tsu06g00011 685 SUPERFAMILY L domain-like 73 257 - -
Tsu06g00011 685 Pfam Leucine rich repeat 139 200 IPR001611 GO:0005515
Tsu06g00011 685 Pfam Leucine Rich Repeat 212 231 IPR001611 GO:0005515
Tsu06g00011 685 SUPERFAMILY Protein kinase-like (PK-like) 377 647 IPR011009 -
Tsu06g00011 685 Gene3D Ribonuclease Inhibitor 209 254 IPR032675 -
Tsu06g00011 685 MobiDBLite consensus disorder prediction 648 670 - -
Tsu06g00011 685 Gene3D Phosphorylase Kinase; domain 1 341 449 - -
Tsu06g00011 685 ProSiteProfiles Protein kinase domain profile. 373 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00011 685 Pfam Leucine rich repeat N-terminal domain 44 88 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00011 Tsu-Chr6 136408 138610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00011 26 674 Receptor kinase-like Gene Family AT4G31250 43.797 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu06g00011 PK_Tyr_Ser-Thr 6.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00011 - - pvu:PHAVU_005G185800g 909.827