Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g00001 | ATGGAAATCGAAGAATGTGTTCGAAAGGAGAAGAGGAAGgcaatgaagaagatgaagaggaaggaGAGAAGAAAGGAGATTGCTGAGAAGGAGCGTCTGGAGGAAGAAGCGCGCCTCAATGATCCCGAAGAGCAGAGAAAGATGCTACTGTTGGAGCAGGAAGAGGCCGAGAGGATCGAAAGGGACAGGATCGCCTTTCAAGAGAGGGAAAACGATTGGAtcatcaaacaacaacaactagaagaagaagaagacggtAACTTCAATAACACTGATAataaagaagaggaagaagatatcgaagaagaagaagacggtCCTCCGGAGATTATTTGGCAAGGAAACGAAATAATCATcaagaataagaagaaaaaggtGGAAAAGTCCCCCGACCttctcctccaccaccaccaccaccaccaccaccaggtATGTTATGTTTTACCTACATTAAACCCCTTTCCCCCGGAGTCTCCCTCTCAAACTCACTCCAATTCAACACTTCTGGACAATAATGTTGCTCAACAATTACCTAATTTCGGAACTGAACtgGATAAAGCTCACTGTCCTTTTCATCTTAAAACAGCAGCATGTCGTTTTGGTGACCGTTGCAGCAGGGTCCATTTTTACCCCGATAAGTCATGCACCATTCTCATAAAAAACATGTACAATGGTCCTGGCCTTGCTTGGGAGCAAGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACACTGTTTTGAAGAGTTTTATGAGGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTCCAAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAGTCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGGATGGGCCGATTCAGACAGACCACCCCCGAAATTTTGGGTTAAGGAGATGGTTGCTTTATTTGGTCATTCTGATGATGACTATGAGATCTCAAGGATCCATGAAAATTTTAGTGCACTGAAGCACTCCAGCAATGTCCCAAAAACAGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGACGGGTCAGTTAAATGGTGGTCGTTCTGGTAGAAGAAAAGAGGAAGATGAAAGTAAGCAAAGAACTCCTGATGAGGAGTGGAATACCAACTTTAAAGACAGCCATAAAAGGAAATGCAGGAACAGAACTCCTGATACTGATTCTGATAGGGAATGGTTAGAAGAGGTAGATAGGGAAAAGTACCATGAACATACAAGGAAAAGTTCATTTAGTAGGAACAAGGATGGCAGTAGCAGAAGGCATGAAGTAGAACATGAAGAGTATTCTGATGTGGATTGGGATGCTATGACTATGACTAGGGACGATGAAAAGCAGCATTGCAGCAGAGGAAGGAACTCACAAAAGTGGAACATGGATAGTAGGTACCGGATATATGAGGATGGATCATACGAGGATAGACATAGAAAAAGCCATCATAGTAGCCAAATGAAAGAATATAGACATCGCAGCAGGGGCAGCAGTTAT | 1596 | 0.3847 | MEIEECVRKEKRKAMKKMKRKERRKEIAEKERLEEEARLNDPEEQRKMLLLEQEEAERIERDRIAFQERENDWIIKQQQLEEEEDGNFNNTDNKEEEEDIEEEEDGPPEIIWQGNEIIIKNKKKKVEKSPDLLLHHHHHHHHQVCYVLPTLNPFPPESPSQTHSNSTLLDNNVAQQLPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTILIKNMYNGPGLAWEQDEGLEYTDEEVEHCFEEFYEDVHTEFLKFGEIVNSKVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYGWADSDRPPPKFWVKEMVALFGHSDDDYEISRIHENFSALKHSSNVPKTDSDRYHSRRSRSRETGQLNGGRSGRRKEEDESKQRTPDEEWNTNFKDSHKRKCRNRTPDTDSDREWLEEVDREKYHEHTRKSSFSRNKDGSSRRHEVEHEEYSDVDWDAMTMTRDDEKQHCSRGRNSQKWNMDSRYRIYEDGSYEDRHRKSHHSSQMKEYRHRSRGSSY | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
| Tsu06g00001 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 183 | 211 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | PANTHER | ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 | 8 | 271 | - | - | |
| Tsu06g00001 | 532 | PRINTS | U2 auxiliary factor small subunit signature | 244 | 259 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Tsu06g00001 | 532 | PRINTS | U2 auxiliary factor small subunit signature | 208 | 228 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Tsu06g00001 | 532 | PRINTS | U2 auxiliary factor small subunit signature | 189 | 208 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 360 | 464 | - | - | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 76 | 109 | - | - | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 478 | 497 | - | - | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 22 | 45 | - | - | |
| Tsu06g00001 | 532 | SMART | c3hfinal6 | 184 | 210 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | SMART | c3hfinal6 | 278 | 307 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 16 | 45 | - | - | |
| Tsu06g00001 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 189 | 208 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 279 | 307 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 504 | 532 | - | - | |
| Tsu06g00001 | 532 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 268 | 528 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Tsu06g00001 | 532 | Gene3D | - | 214 | 284 | IPR012677 | - | |
| Tsu06g00001 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 278 | 308 | IPR000571 | GO:0046872 | |
| Tsu06g00001 | 532 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 8 | 271 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Tsu06g00001 | 532 | PANTHER | ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 | 268 | 528 | - | - | |
| Tsu06g00001 | 532 | Coils | Coil | 4 | 40 | - | - | |
| Tsu06g00001 | 532 | MobiDBLite | consensus disorder prediction | 355 | 464 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g00001 | Tsu-Chr6 | 11552 | 19397 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Tsu06g00001 | zf-CCCH | 1.3e-06 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g00001 | K24273 | - | cam:101495256 | 687.182 |