Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04246 ATGGCTAAGAGATCAGATTTTGCACAGAAGCTTCTCGATGATCTGCGCCTAAGGAAAGAAAGAATGGCTGCTACTACATCACATTCTCATAACTCAAACCAATCCCGCCATTTACCTATAGATGCATATGCATACACCAAGCAAACCTACAGAGGGTCGACAAATACAAGAGCAAATGAAATTGTTAGTTCCAGAAATGGGAAGATGGTAAATATGTCTAGCAGAAAGCAGAGATCTCTAAAGAGCGGGGGAAACTTGTCAAATCAGATTATTCCATATGGGAAAGCCTTTGAGCATAATGGAGGGAAACTAAGAAGAGCCGATTTGTCTTTCACCAATTCAATTTTGGGTTTCCTTCACCAAATTCAAAGGGGAACGATGGATAGAGGAGGCAACTTGGAAAGACAACTAGCTTCAACTAGCCAAACCCTCTCTCATGTGCAGATAAATGAGATATCAAAAGGTGCACATAAACTAAACCACATATTGAGAGCTTGCTTCTCCAATGGTGCTAACATGGACACATATTCATTAAATTTTGCAAAGGAACTATTACAAGGAGCTATTGATTTGGAAGATTCCATCAGGATGCTAGTAGACCTGCAGAAAAGTTCAGAGTTTATGATTACCTCGCAAGCGCATAACAAAAATCGAATCACGCTATTAGAAGAGAAGGAAGAGGAGGATAATGAAGAGGGTGAGAGGAGGAGCATGGAGAAAATGCAACTGGCACATCCAACTTTCTTGTTTGACAACAAGATGCAGAGACCAATTACCATCACTAACTCTAAGGAAGCCAGAAAGATAAAAGATTCTCAGCAGAAACGAATATCAGCTGACACTGGTGGAGCTGCTGACATTTCAAACCAGATGGTCGATGAGGGAAGGATTCCAAACGTAATAGCCAAACTAATGGGGCTGGAAAACCATCCCAAGAAGGACTCAGAAAATAGTAATATTGCATCATCCAAGCACTCTGCCAAAGGAAGCGGCATCACTACACTGAAGAGCAAACAAATAGACAATTTGATCAAAAACCAAAAAGTGGCTGTTGGATCCTTCAAAAACCTAATGTTTGGTAGTCTAGATACAAATTTGGTCCTCAAAAACCAAAAGGCTACCTATTATTCTGAGTCTGAGGTGGTTGGAATAAAAGCATTGAAGGGCTTTGACAAGGCCAGCATCATCAACGGTTCTGCTCGTCAAAATTATGTTGAGGCGATGATGGGAAGGAAACAGGATCACCCACAAAACAGTGGCACGTTGAAGGGAAGAAGCACCAATGGCAATGATGTGGGTCAAAATCTAAATAATATGCATGAAAGAAGATCCCAAGTTAAACCTGCCATTCAGATTGCAAAAGAAGAACATACAGTAACAAACAAGCACATGCAGATGAACAATGAAAAGAAGTCTTGGGATCATCTCGTAGTTCAAAAGTCAATACTCTCCACAGGTGGAGGGAGTGAAATGACACCCAAGAATTCACCAAAACAATCCTTCAATAATgttcagaagaagaaaaaaaaatcatccataAACCAACCCAAGAAATCAAGTGGTGATCATGATATAGTCGCATCCAGTGAGAAagtaaaagaaattattaatagGAAGAAGTCCTCCCCAAGATATCAAGAATTTGAACGAGCTAATGGGAGGCAAACACTCAAGGATCATAAACTCGCGACCAGCAACAAAATAAAGCCTAAAAAGATTGAACAAATTTTGAGTAGAAGTAGACAGGAAGCTTGTGATAGAGCATCTGGCAAATTCAATGTCTTAAACGGAGCAGAGCACAAAAGGTTTAGCATGTTCGTTGAACAGGAACTGCTTCCTCCTACTACATTATACAACTCTGGCGGTAGTGGAGATTTACAAGAACCGGACAATGATTTGAAATATCAAGCTGTGCAACGGGCAGCAATCAATTTGCCAGATCAAGCTGTTCCTGAGGCACCACGTGAAGGATTCAAGACTAGTGAAGTTGCATACcataaaagtaaaacaaacgGAGTTCTGGAAGACAGAATGGGTGTGAAACTACAAGATCAAAATATAAACATCCAACAACCACTAACAGAAAGTGAAAACTGCCTCAAGTGGATTTTAGTCATGAGtcaattattcatcaacacTGCAGAAGCACTTTTCAGACTAAACATCCCGTTTGGTATTCTCCAAGGTGGTCGTCAAGACAGTCAAGACCAAAGTAGCAAACTGATATTAGATTGCGGCTATGAAGTGATGAAAAGAAAGGGGATACGGCAGGAGCTCAAAGTTCATACTTGTTCAAAGATATCATCAATCACTAGTACTTTTAACTTAATAAGATCCCTAGATGACTTGGTTAGGAAGTTGAACGAGGACATGGAGAAGCTTAAATTCTACGGAAGGAAAAAAAGTAGTCAGGTTGATGTAGAAGATTACCTGCCTAAGATGCTTGAGCATGATGTCTATGATAAATGTCCAGACATAGACTGCATGTGGGATTTGGGTTGGAATGATGAGACATTTGCATTTATCGAAAAATATGATGTTATAAGGGATACAGAAAAGCATATCCTTAGTGTACTTCTGGATGAGATCACCAAAGATTATTGCACGATCAAGAAGGATTGA 2622 0.3902 MAKRSDFAQKLLDDLRLRKERMAATTSHSHNSNQSRHLPIDAYAYTKQTYRGSTNTRANEIVSSRNGKMVNMSSRKQRSLKSGGNLSNQIIPYGKAFEHNGGKLRRADLSFTNSILGFLHQIQRGTMDRGGNLERQLASTSQTLSHVQINEISKGAHKLNHILRACFSNGANMDTYSLNFAKELLQGAIDLEDSIRMLVDLQKSSEFMITSQAHNKNRITLLEEKEEEDNEEGERRSMEKMQLAHPTFLFDNKMQRPITITNSKEARKIKDSQQKRISADTGGAADISNQMVDEGRIPNVIAKLMGLENHPKKDSENSNIASSKHSAKGSGITTLKSKQIDNLIKNQKVAVGSFKNLMFGSLDTNLVLKNQKATYYSESEVVGIKALKGFDKASIINGSARQNYVEAMMGRKQDHPQNSGTLKGRSTNGNDVGQNLNNMHERRSQVKPAIQIAKEEHTVTNKHMQMNNEKKSWDHLVVQKSILSTGGGSEMTPKNSPKQSFNNVQKKKKKSSINQPKKSSGDHDIVASSEKVKEIINRKKSSPRYQEFERANGRQTLKDHKLATSNKIKPKKIEQILSRSRQEACDRASGKFNVLNGAEHKRFSMFVEQELLPPTTLYNSGGSGDLQEPDNDLKYQAVQRAAINLPDQAVPEAPREGFKTSEVAYHKSKTNGVLEDRMGVKLQDQNINIQQPLTESENCLKWILVMSQLFINTAEALFRLNIPFGILQGGRQDSQDQSSKLILDCGYEVMKRKGIRQELKVHTCSKISSITSTFNLIRSLDDLVRKLNEDMEKLKFYGRKKSSQVDVEDYLPKMLEHDVYDKCPDIDCMWDLGWNDETFAFIEKYDVIRDTEKHILSVLLDEITKDYCTIKKD 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04246 873 MobiDBLite consensus disorder prediction 484 530 - -
Tsu05g04246 873 Coils Coil 870 873 - -
Tsu05g04246 873 MobiDBLite consensus disorder prediction 484 509 - -
Tsu05g04246 873 PANTHER OS01G0228800 PROTEIN-RELATED 531 868 - -
Tsu05g04246 873 PANTHER OS01G0228800 PROTEIN-RELATED 1 574 - -
Tsu05g04246 873 MobiDBLite consensus disorder prediction 309 332 - -
Tsu05g04246 873 PANTHER EXPRESSED PROTEIN 531 868 - -
Tsu05g04246 873 PANTHER EXPRESSED PROTEIN 1 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04246 Tsu-Chr5 53015289 53019810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04246 691 870 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 45.055 6.46e-38 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04246 - - mtr:MTR_8g107730 1319.29