Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04237 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAATATATCCAGGGCTTCACCCAGCCCGAGTCAGATCATTCTTCCAAACGCAGCACAACTCGTTCTTCTCGTTCTTCTGACTCAGATCaccccaacaacaacaacaaacaatcTCAACCTTCACCTTTCACCTTTAAGACCAACACCACCATGCGTCGAGGCCCTGATAATCAGTCTTATTATGTCTTAGGTCATAAGACTCCTAATATTCGTGATCTCTATACTCTTGGCCGTAAACTTGGTCAAGGTCAATTTGGCACCACTTATTTAGCCACAGACAATTCAACCTCCATTGAATATGCTTGCAAATCTATTTCCAAGAGAAAGCTTATTTCCAAGGAGGATGTTGAAGATGTTAGGAGGGAAATTCAGATTATGCATCATTTGGCTGGTCACAAGAACATTGTTACCATCAAAGGTGCCTATGAGGATGCACTCTATGTTCATATTGTCATGGAGCTATGTTCTGGTGGTGAATTGTTTGATCGTATCATTCAGAGAGGTCATTACACCGAAAGGAAGGCTGCTGACTTGACCAAAATTATTGTTGGTGTTGTCGAGGCCTGTCATTCCCTTGGTGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGACGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCCGTTTTCTTCAAACCAGGTCAAGTTTTCACCGACGTAGTTGGCAGCCCGTACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGCCCTGAAGCAGATGTGTGGACGGCCGGTGTCATACTTTATATATTGCTCAGTGGTGTGCCGCCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATTGATTTTGACTCAGATCCATGGCCTCTAATATCTGATAGTGGAAAAGACCTTATTAGAAAGATGCTGTGTTCTCGGCCTTCAGATCGGTTGACTGCTCATGAAGTTTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCAGACAGAGCATTGGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTACGGGTAAATAAAGCTAATGAATATTAA 1155 0.4182 MGNTCRGSLKGKYIQGFTQPESDHSSKRSTTRSSRSSDSDHPNNNNKQSQPSPFTFKTNTTMRRGPDNQSYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLATDNSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDALYVHIVMELCSGGELFDRIIQRGHYTERKAADLTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSRPSDRLTAHEVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVNKANEY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04237 384 MobiDBLite consensus disorder prediction 36 67 - -
Tsu05g04237 384 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04237 384 MobiDBLite consensus disorder prediction 1 70 - -
Tsu05g04237 384 Pfam Protein kinase domain 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04237 384 Gene3D Phosphorylase Kinase; domain 1 87 171 - -
Tsu05g04237 384 CDD STKc_CAMK 85 342 - -
Tsu05g04237 384 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04237 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Tsu05g04237 384 Gene3D Transferase(Phosphotransferase) domain 1 172 384 - -
Tsu05g04237 384 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 52 378 - -
Tsu05g04237 384 SUPERFAMILY Protein kinase-like (PK-like) 67 366 IPR011009 -
Tsu05g04237 384 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 378 - -
Tsu05g04237 384 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04237 Tsu-Chr5 52901474 52903691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04237 1 378 EF-hand Containing Proteins AT2G17290 82.058 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g04237 Pkinase 7.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04237 K13412 - gmx:100778173 677.167