Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04235 ATGCTGTCTCCGGCAACAATGAAGGTGTTGCTGTTACTTGTTCTTTTAGTAACAGCAACATCAGCAGATCTAGATTCCCAGCGAGCTGCATTGCTAGCTCTCCGTTCTTCCGTCGGCGGCAGAACTCTTTTCTGGAACGCTACCAATCAAACTCCCTGCAACTGGACCGGCGTCCAATGCGACCGCGACCGAGTCGTCGAGCTTCACCTTCCCGGTGTCGCTCTTTCCGGTCAAATACCCACCGGCATATTCTCCAATCTCACCTATCTCCGTACACTCAGTCTCCGTTTCAATGCTCTCACCGGTTCACTCCCTTCAGATCTCTCATCCTGCGTCGACCTCAGAAACCTTTACCTTCAACGAAACCTTCTCTCCGGCGAAATCCCTCAGTTTCTGTTCAACTTACCTGAATTGGTTAGACTCAACATGGGTTTCAACAATTTCTCAGGTTCTATTTCAAACTCATTCAACAACTtcacaagactcaaaaccctctTCCTTGAAAACAATCAACTTTCTGGTTCCATCCCGGAGTGGGACCGGCTCAGCCTCGATCAGTTCAATGTCTCTAACAATCTTTTAAATGGCTCTGTTCCCAAAAACCTCCGGACTTTCTCTCAAGATTCCTTTTTGGGAAATTCCCTCTGCGGCAAACCTCTTTCTCTCTGCCCCGGTGAAACCGATTCTTCTGATTTTACTGCCTCTCCCGGTAACAAGAAGAACAGCTTGTCCGGCGGAGCCATTGCCGGAATCGTAATTGGATCCATAGTGGGTCTTCTTTTGCTCGTTTTCCTTTTGATCTTCCTGTGCAGGAACAAGAGCAGCAAAAAGACCAGTGCTGTTGATGTTGCAGCTGTCAAACAACATCCAGAATCTGAAGTTGTTTCTCATGACAAGTCTATTTCTGACTTGGAGAATGTAAATGGAAATGGATATCCTACTGCTGCTGCGGCGGCAGTTGCAGTCAACAAGGTTGAAGCAAATGGCAATGGAAATGCTGCTGTTGGTGGTGGAGCTAAGAAGTTGGTGTTTTTTGGGAATGCAGAGAGGGCTTTTGATCTGGAGGATTTATTGAGGGCATCCGCGGAGGTGTTGGGTAAAGGAACGTTCGGGACGGCATATAAGGCAGTATTGGAGTCAGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTGACAATAACTGAGAAGGAGTTCAGAGAGAAGATTGAAGCGGTGGGAGCAGTAGATCATCAGAGTTTGGTACCTCTAAGGGCTTACTATTTTAGCAGAGATGAGAAGCTCCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCGCTGAATTGGGAAATGAGATCAGGCATTGCACTAGGAGCAGCCCGTGGCATTGAGTACCTTCATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAACATCCTCTTAACCAAGTCGTATGATGCAAGAGTGTCTGATTTTGGGCTTTCACAGCTTGTTGGCCCCTCCTCTACCCCAAACCGTGTTGCCGGGTACCGTGCACCAGAAGTAACCGATCCTCGCAGAGTGTCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTGGAACTTCTGACTGGGAAGGCACCTACACATGCTCTTCTAAATGAAGAAGGTGTAGATCTCCCCAGATGGGTTCAGTCGGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAAATGGTTCAGTTGCTGCAACTTGCTGTTGATTGTGCAGCACAATACCCCGACAAGCGCCCTTCAATGTCTGATGTGGTACGGAGCATAGAAGAATTACGTCAATCTAGCTTGAAAGATGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1950 0.4667 MLSPATMKVLLLLVLLVTATSADLDSQRAALLALRSSVGGRTLFWNATNQTPCNWTGVQCDRDRVVELHLPGVALSGQIPTGIFSNLTYLRTLSLRFNALTGSLPSDLSSCVDLRNLYLQRNLLSGEIPQFLFNLPELVRLNMGFNNFSGSISNSFNNFTRLKTLFLENNQLSGSIPEWDRLSLDQFNVSNNLLNGSVPKNLRTFSQDSFLGNSLCGKPLSLCPGETDSSDFTASPGNKKNSLSGGAIAGIVIGSIVGLLLLVFLLIFLCRNKSSKKTSAVDVAAVKQHPESEVVSHDKSISDLENVNGNGYPTAAAAAVAVNKVEANGNGNAAVGGGAKKLVFFGNAERAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTITEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLSQLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSDVVRSIEELRQSSLKDEQDQIQHDNNDIEL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04235 649 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Tsu05g04235 649 PANTHER OS05G0588300 PROTEIN 9 643 - -
Tsu05g04235 649 SUPERFAMILY L domain-like 44 205 - -
Tsu05g04235 649 Gene3D Ribonuclease Inhibitor 137 223 IPR032675 -
Tsu05g04235 649 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
Tsu05g04235 649 Gene3D Phosphorylase Kinase; domain 1 333 433 - -
Tsu05g04235 649 Gene3D Transferase(Phosphotransferase) domain 1 434 648 - -
Tsu05g04235 649 CDD STKc_IRAK 365 628 - -
Tsu05g04235 649 ProSiteProfiles Protein kinase domain profile. 359 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04235 649 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Tsu05g04235 649 Pfam Protein kinase domain 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04235 649 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 643 - -
Tsu05g04235 649 SUPERFAMILY Protein kinase-like (PK-like) 363 626 IPR011009 -
Tsu05g04235 649 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Tsu05g04235 649 Pfam Leucine rich repeat 78 124 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04235 Tsu-Chr5 52881474 52884551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04235 21 639 Receptor kinase-like Gene Family AT1G48480 64.521 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu05g04235 Pkinase 3.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04235 - - gmx:100818955 938.717