Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04232 ATGGGGATTTGCTGGAGTTATCCACCTAAAAATCCAACTCCAACTGGAACTGTTACACCTGCAGGGATATCTCATTCTCAGACAACAAGTGGAAGCTATGGTATTAGTTCCACCACCACTGCTTCAACAACCACTACTACTTTCAATTCTGCTTCCATTACTACTTCTTCTTCTGGAACCAGCAGTAATATGTCTTCCTCCATAAATAGAAGCAACTTCTCCTCACTCTCTGATTATTCAATTGGTGGCCAGATCTTACCTACTTCCAATTTGAGGGTCTTCACTTTTGCTGAATTGAAGGCAGCTACCAAGAATTTCAAACTTGATACACTCCTTGGTGAAGGAGGTTTTGGTAAAGTCTACAAAGGATGGCTTGATTCCAAGAATAGTAGTGGAACTACCGTTGCCGTCAAAAAATTGAACTCCGAAGGCTACCAAGGACTCAAGGAGTGGGAGTCAGAGATACATTTTCTAGGACGGCTTTATCATCCTAACCTTGTTAAGCTGTTGGGATATTGTTACGAGGAAACGGAGCTTCTTCTTGTCTATGAATACATGCAGAAGGGCAGTTTGGAACATCATCTCTTTGGAAGGGGTGCTGCTGTTCAGCCACTTCCTTGGGATCTCAGGCTTAAGATAGCAATTGGAGCAGCTGCTGGTCTTTCGTTCTTGCATACATCCGATCGAGAAATTATTTATAGAGACTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGATTTTGGACTTGCTAAGTTGGGTCCTTCGGCTAGTCAATCCCATTTATCAACAACCGTAATGGGCACACCTGGTTATGCAGCTCCCGAATATATGCAAACAGGGCATCTATATGTAAAGAGCGACGTGTATGGGTTTGGAGTTGTTTTAGTTGAGATACTGACAGGCCTACGGGCCATTGATCTTAACCGTCCAACCGGGTATCACAGTCTAACGGACTGGATCAAACCACACCTACAcgataaaagaaaattgaggAGGGTTATGGATCATCATTTGGGAGATAAATATCCAATCAAAGCTGCATTTCCTATAGCTAAGCTTGCTTCAAGATGTCTTGCACCTGAGCCGAAAATGCGCCCATCCATGAAGGATGTTCTGGAGGACTTGCAGGGAATTCAAGCTTCCACAAACAAAACTGTGGAGGCTGCTACCAAGAATTTCAAACCTGATACACTTCTTGGTATAAGAGCTTTTGGTAACGTCTACAAAGGATGGCTTGATTCCAATAATAGTAGTGGAACTACCGTTGCCGTCAAAAGATTGAACTCCGAAGACTACCAAGGACTCAAGGAGTGGGAGTCAGAAATACATTTTCTAGGACGGCTTTATCATCCTAACCTTGTTCAGCTGTTGGGATATTGTTACGAGAAAAGAGAACTTCTTCTTGTCTATGAATACATGCAGAAGGGGAGTTTGGAACATCATCTCTTTGCAAGGGGTGCTGCTGTTCCTTGGGATATCAGGCTTAAGATAGCAATTGAAGCAGCTGCTGGTCTTTCGTTCTTGCATGAATCCGATCGAGAAATTATTTATAGAGACTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATACTGCAAAGATATCGGATTTTGGACTTGCGAAATTGGGTCTTAGTCAATCCCATTTATCAACAACTGTAATGGGCACACCTGGTTATGCAGCTCCCAAATATATGCAAACAGGGCATCTATATGTAAAGAGCGACGTGTATGGGTTTGGAGTTGTTTTAGTTGAGATACTGACAGGCCTGCGAGCCATTGATCCTAACCGTCCAACCGGGTATCACAGTCTAAGGGACTGGGTCAAACCATACCTACACAGTagaagaaaattgaagaagattATGGATCATCATTTGGGAGATAAATATCCAATCGAAGCTGCATTGCCTATAGCTAAGCTTGCTTCAAGATGTCTTGCACGTGAGCCCATAATGCGCCCGTCCATGAAGAATGTTCTGGAGATATTGCAGCGAATTCAAGATTCCACAAACAAAACCGTGAATTAA 2052 0.4206 MGICWSYPPKNPTPTGTVTPAGISHSQTTSGSYGISSTTTASTTTTTFNSASITTSSSGTSSNMSSSINRSNFSSLSDYSIGGQILPTSNLRVFTFAELKAATKNFKLDTLLGEGGFGKVYKGWLDSKNSSGTTVAVKKLNSEGYQGLKEWESEIHFLGRLYHPNLVKLLGYCYEETELLLVYEYMQKGSLEHHLFGRGAAVQPLPWDLRLKIAIGAAAGLSFLHTSDREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDLNRPTGYHSLTDWIKPHLHDKRKLRRVMDHHLGDKYPIKAAFPIAKLASRCLAPEPKMRPSMKDVLEDLQGIQASTNKTVEAATKNFKPDTLLGIRAFGNVYKGWLDSNNSSGTTVAVKRLNSEDYQGLKEWESEIHFLGRLYHPNLVQLLGYCYEKRELLLVYEYMQKGSLEHHLFARGAAVPWDIRLKIAIEAAAGLSFLHESDREIIYRDFKASNILLDGSYTAKISDFGLAKLGLSQSHLSTTVMGTPGYAAPKYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDPNRPTGYHSLRDWVKPYLHSRRKLKKIMDHHLGDKYPIEAALPIAKLASRCLAREPIMRPSMKNVLEILQRIQDSTNKTVN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04232 683 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 40 388 - -
Tsu05g04232 683 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 391 677 - -
Tsu05g04232 683 ProSiteProfiles Protein kinase domain profile. 400 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04232 683 Pfam Protein tyrosine and serine/threonine kinase 405 671 IPR001245 GO:0004672|GO:0006468
Tsu05g04232 683 Pfam Protein tyrosine and serine/threonine kinase 107 382 IPR001245 GO:0004672|GO:0006468
Tsu05g04232 683 CDD STKc_IRAK 411 674 - -
Tsu05g04232 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Tsu05g04232 683 Gene3D Phosphorylase Kinase; domain 1 406 480 - -
Tsu05g04232 683 Gene3D Phosphorylase Kinase; domain 1 82 185 - -
Tsu05g04232 683 Gene3D Transferase(Phosphotransferase) domain 1 481 683 - -
Tsu05g04232 683 Gene3D Transferase(Phosphotransferase) domain 1 186 405 - -
Tsu05g04232 683 MobiDBLite consensus disorder prediction 1 36 - -
Tsu05g04232 683 PANTHER OS01G0588500 PROTEIN-RELATED 40 388 - -
Tsu05g04232 683 PANTHER OS01G0588500 PROTEIN-RELATED 391 677 - -
Tsu05g04232 683 ProSitePatterns Protein kinases ATP-binding region signature. 112 139 IPR017441 GO:0005524
Tsu05g04232 683 SUPERFAMILY Protein kinase-like (PK-like) 83 383 IPR011009 -
Tsu05g04232 683 CDD STKc_IRAK 112 385 - -
Tsu05g04232 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Tsu05g04232 683 SUPERFAMILY Protein kinase-like (PK-like) 388 672 IPR011009 -
Tsu05g04232 683 MobiDBLite consensus disorder prediction 10 36 - -
Tsu05g04232 683 ProSiteProfiles Protein kinase domain profile. 106 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04232 Tsu-Chr5 52857058 52862518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04232 391 675 Receptor kinase-like Gene Family AT4G02010 45.578 7.09e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu05g04232 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04232 - - ccaj:109789667 642.499