Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04228 ATGGAATATGGTGGCGGGCTAGTCGGGGACGGTGGTGTGTTTGGGAACATGGTGGGAGGAGGAGGAGAAGCAGATATGATTGAGGAGCTTTTGGTAGATGGTTGTTGGATTGAAGCAAGTGAAAATAATATGATGGCGATGCAGTCGCAGACACACTATAtgactaataataatattccaaTTAATGGAATGGGAGAGGGAGACCACTttaataatcatcatcataatcaaattgaatGCAATGTTCCAACAGATCATGATGATGATCAAGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGTCCTAGGGCTAATCCAGGTCCATCAACTTCTGTCAAAGAGAGATTAGTTGTAGCTGTTGGTTACTTAAAAGAGTATACAAAGAATTCCTCAAACAACGTTCTTATTCAGATATGGGTACCAGCTCTAAGGAGGAGATCACCTCTAATTCACAATCACTACTTGCACGAATCCTCATCATCTGCTCCGGTTTCTGTCAATCCAAACACCAATGTTCATGTTCGTTTCTTTAGAAGCCACGAGTATCCGCGGCATCAGCAGCAACAATATGGATCTCTTTTTGCACTTCCGGTTTTTGAAAGAGGAAGCGGGACATGCCTTGGTGTGATTGAGTTTGTTATCACTAATCAAACCGTTGTCAATTACCGTCCACAACTTGATCATCTCTCCAATGCTCTTGAGGTATTTGAGGAGTTGTATGAAGCAGCTGTGAATGAGATTGTAGAGGTGTTGGCATCTGTGTGCAAGACGCACAATTTGCCATTAGCACTCACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAGTTAGAGGAAAAGGAACCGCCGGTGCAGCAGGATGCGGTGTTTCAGTCACGGCTCCAACGGATCAgatgaataataataatcagatgatgatgaattgcgTATCGACAGTTGATTCAGCTTGTTATGTTGGTGACATGGAGGTATTGGGATTCCAAGAAGTGTGCAGTGAGTATCACCTTTTCAATGGACAAGGAATTGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTCGCTATTGACATTACCGCCTTCAGCAAAGCCGAATACCCACTTGCTCACCATGCTAACATGTTTGGCTTACACGCCGCGGTTGCAATTCCACTTAGGAGTGTCTACACTGGATCTGCTGCTGATTTTGTTTTGGAGTTTTTCCTTCCTAAAGATTGTCGCGATCCCGAGCAACAGAAACACATGCTCAACTCATTATCCCTAGTTGTTCAACAAGCTTGTAGAAGCTTGCATTTGCATGTGGTCATGGATGATACTGACAATGCTAATCATCATGATCATGAACAAGATCAATTCACCttcccaacaacaacaaataattacATGCCTTCTTCTGCTTCTGATGCTGCTACTGCATCACTGTCACAAGTTGATGCAACATCAGGTTGCTCAACAAAAGacacatcatcatcatgttCTTGGATTGCACACATGATGGAGGCACAACACAAAGGAAAAGGTGTGTCGGTGTCTTTGGAATATCTTCAAGAGCCTAAAGAAGAGTTCAAAGTCACAACATGCAACTGGGACAGAGAGAGGGAGGGCAATTCTGTCTTTTCAGAATTCGGCCAAGTTCTGCAGCATGACCAGAGCAGTAATTCAAGAGCAAGTGTTGAAGCTGGGGAAGAATCTGGCGGCTGCGGTGTTGGTGGTGGTCGTCGGTCATCTTCTTCTTCGAGTGGAAGAAAGTCAGGCGACAAGCGAAGAACCAAGGCGGAGAAGACTATTAGCTTGCCGGTTCTGAGACAATACTTTGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACCACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCAAGGAAAATAAAGAAAGTGGGCCACTCTTTGAAGAAGCTTCAACTGGTGATTGATTCTGTTCAAGGCGCCGAGGGCGCAATACAGATTGGTTCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAACTGctaatggtggtggtggtgatcaTAGCAACGTTAACAACAGCTTCTATAACAGCCATGGAGATGGAGTAGTTACTGGTTTGAAATCTCCACCCTCTTCTTGCAGCCAGACACATGCAGCAGGAAACAAACTTATCACTGCTAACACCATTAATGGagaacatcatcatcatgttATGATGACAGAAAACCCTACAGGTCCTTCAGCAGCTGATGCATTAATGATGCATGGATCCAATATCAATATCCAAAACTACCAGCAGTTGCAAGAGGATCAGGATACTAAACAATTACTGCTACAtttcaacaacaataacaaccaaACCCTACCTCCAAGGCCAACTGGAGGAGCCTGGAACAACaataattcatcatcatcaggACTACTGGAAAGGGGTGCTTTCAGAGTGAAGGCGACATTCGCGGATGAAAAGATTCGGTTTAGTTTGCAAGCAATGTGGGGTTTTAGAGATTTGCAGCTTGAGATTGCAAGGCGTTTCAACCTAAATGATATGAATAATTTGGTTCTCAAGTATTTGGATGATGAAGGTGAATGGGTTGTATTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCATCTCACACACGTACCATTAGACTCTCACTATTTCAAGCTTCACCTCTCAATCTACCAAACAACTTCGTCcgcaacagcagcagcagccCATCCTCCTAG 2754 0.4099 MEYGGGLVGDGGVFGNMVGGGGEADMIEELLVDGCWIEASENNMMAMQSQTHYMTNNNIPINGMGEGDHFNNHHHNQIECNVPTDHDDDQESGFVVGKRWWIGPRANPGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSPLIHNHYLHESSSSAPVSVNPNTNVHVRFFRSHEYPRHQQQQYGSLFALPVFERGSGTCLGVIEFVITNQTVVNYRPQLDHLSNALEVFEELYEAAVNEIVEVLASVCKTHNLPLALTWAPCIQQQGGGVRGKGTAGAAGCGVSVTAPTDQMNNNNQMMMNCVSTVDSACYVGDMEVLGFQEVCSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDPEQQKHMLNSLSLVVQQACRSLHLHVVMDDTDNANHHDHEQDQFTFPTTTNNYMPSSASDAATASLSQVDATSGCSTKDTSSSCSWIAHMMEAQHKGKGVSVSLEYLQEPKEEFKVTTCNWDREREGNSVFSEFGQVLQHDQSSNSRASVEAGEESGGCGVGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTATANGGGGDHSNVNNSFYNSHGDGVVTGLKSPPSSCSQTHAAGNKLITANTINGEHHHHVMMTENPTGPSAADALMMHGSNINIQNYQQLQEDQDTKQLLLHFNNNNNQTLPPRPTGGAWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNNFVRNSSSSPSS 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04228 917 CDD PB1_NLP 816 897 IPR034891 -
Tsu05g04228 917 Coils Coil 228 248 - -
Tsu05g04228 917 PANTHER PROTEIN NLP8 28 903 IPR045012 GO:0003700
Tsu05g04228 917 ProSiteProfiles PB1 domain profile. 815 898 IPR000270 GO:0005515
Tsu05g04228 917 Gene3D - 814 900 - -
Tsu05g04228 917 ProSiteProfiles RWP-RK domain profile. 584 665 IPR003035 -
Tsu05g04228 917 SMART PB1_new 815 898 IPR000270 GO:0005515
Tsu05g04228 917 SUPERFAMILY CAD & PB1 domains 804 900 - -
Tsu05g04228 917 MobiDBLite consensus disorder prediction 552 595 - -
Tsu05g04228 917 Pfam RWP-RK domain 598 645 IPR003035 -
Tsu05g04228 917 PANTHER PROTEIN NLP2 28 903 - -
Tsu05g04228 917 Pfam PB1 domain 816 897 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04228 Tsu-Chr5 52816785 52820045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04228 14 907 NLP Transcription Factor Family AT4G35270 40.140 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu05g04228 PB1 3.6e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04228 - - mtr:MTR_5g099060 1384.01