Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04227 ATGAAATCAGAAGATAATTCTGATCATAGCGGCGATTCTTCTTCACACAAGAAGAAAGATCATCATCGTCCAtattcttcttctctttctggTAAGACTAAGAAGCGGAAGTATGAAGCAGAATCATCCTCAGCAAACAACAATGAGGTCCTTGATTGTACTGAATGCGGTAAGAAATTCTGGTCACGTAAGGCACTTTTTGGTCACATGCGTTGTCATCCTGAACGTCAATGGAGAGGCATTATTCCTCCTCCTAATTTCCGACGACGACAACAACACACTCACagtgcttcttcttcttctcctcacTCATTCGTCAATACCGTCACTCCTAACGATCATGAAGTTGCTTCCTGTTTAATCCTACTCGCAAATTCAAAACCCAGGTCGTCATCGAGTGTTAAGGCAGTTACTAATAGAGttgttgatgataataatgTTGTAGATcaagacaataataataataatggtcaTTTTGTTTGTTCCTTTTGCAATAAGGTTTTTGGATCTCATCAGGCTCTTGGTGGACACAGAGCAAGTCACAAAAATGTCAAGGGCTGTTTCGCCAATACAACTATTCCAATAACCGCTTCCACTAGCAGCAGAATGATGACGTGGACACAACACGGTAGTAGTGGAGGAGGAGATCATGCTTTTCTTCTTactgcttcttcttctgatcATCATCATGAACAACAGCAACAGCAACAGATGATGGTGCCGCGTGACAGTTATAATAATGCTGGTGACGTGGAAGGTGAAGCGGTTAATAATGAGATAAGCGGCAGTGGCGGAGGAGGAGGAGGACATCACCAGTGTAGCATATGTTTTAGGGTGTTTACCACGGGACAAGCACTTGGTGGTCATAAGAGGTGTCATTGGGAGAAAGGGGAAACAAGTGGAGTAGCAGCAGCATTGGACTCTGTTGCAACAACATCCAACAGCAACAAGTCTTCTTCTTCTAatgttaatgttgttgttgactTGAATTTCCCTTTTCCTCCACCACCACCGCCTCCTGATGATCCTGATGACTCTTCTCTTGATTTGAGGTTGggactttaa 1065 0.385 MKSEDNSDHSGDSSSHKKKDHHRPYSSSLSGKTKKRKYEAESSSANNNEVLDCTECGKKFWSRKALFGHMRCHPERQWRGIIPPPNFRRRQQHTHSASSSSPHSFVNTVTPNDHEVASCLILLANSKPRSSSSVKAVTNRVVDDNNVVDQDNNNNNGHFVCSFCNKVFGSHQALGGHRASHKNVKGCFANTTIPITASTSSRMMTWTQHGSSGGGDHAFLLTASSSDHHHEQQQQQQMMVPRDSYNNAGDVEGEAVNNEISGSGGGGGGHHQCSICFRVFTTGQALGGHKRCHWEKGETSGVAAALDSVATTSNSNKSSSSNVNVVVDLNFPFPPPPPPPDDPDDSSLDLRLGL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04227 354 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Tsu05g04227 354 MobiDBLite consensus disorder prediction 1 42 - -
Tsu05g04227 354 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Tsu05g04227 354 MobiDBLite consensus disorder prediction 329 354 - -
Tsu05g04227 354 MobiDBLite consensus disorder prediction 82 105 - -
Tsu05g04227 354 SUPERFAMILY beta-beta-alpha zinc fingers 52 181 IPR036236 -
Tsu05g04227 354 Pfam C2H2-type zinc finger 270 295 - -
Tsu05g04227 354 Pfam C2H2-type zinc finger 158 182 - -
Tsu05g04227 354 Pfam C2H2-type zinc finger 53 75 - -
Tsu05g04227 354 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 354 - -
Tsu05g04227 354 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Tsu05g04227 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Tsu05g04227 354 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 354 - -
Tsu05g04227 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Tsu05g04227 354 MobiDBLite consensus disorder prediction 1 44 - -
Tsu05g04227 354 SMART c2h2final6 271 293 IPR013087 -
Tsu05g04227 354 SMART c2h2final6 51 73 IPR013087 -
Tsu05g04227 354 SMART c2h2final6 159 181 IPR013087 -
Tsu05g04227 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Tsu05g04227 354 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04227 Tsu-Chr5 52793991 52795055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04227 53 331 C2H2 Transcription Factor Family AT4G35280 41.696 3.62e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g04227 zf-C2H2_6 3.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04227 - - cam:101508937 253.062