Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04220 atgaatgaattaatttCAGGGGAAAATCAGACTATTGAGTGGGCCATGAGGTTAAGAGTTGCTCTTTATATTGCACAAGCTTTGCATTATTGTACTTCTGAAGGACGGCCCTTATACCATGATTTGAATGCTTATCGCGTTCTATTTGATGAgGAAGGTGATCCACGTCTCTCTTGTTTTGGTTTAATGAAGAACAGCAGGGATGGAAAAAGTTATAGCACAAACCTTGCTTACACACCTCCTGAATATTTAAGAAATGGAAGAGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTCGACCTACTCAGTGGCAAGCACATCCCACCTAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTGATGGATTCTCATTTGGAGGGAAAGTTTTCTACAGAAGAGGCAACAGTAGTTGTCAATCTTGCCTCTAAATGTTTGCAATATGAACCGCGAGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCATTGCACACAAAACCCGATGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCAAGAAGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGCGAGGCTTGCTCAAGAATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACCCACTACAGAGATGATGAAGGGACTAATGAGTTGTCATTCCAAGAGTGGACTCAACAAATGAGAGATATGCTGGAGGCAAGGAAGCGCGGAGACTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTCATTGATGTGGGAACGATGGTCTCACCCACAGTTTTTGCAAGGCGTAGTCTATGCTACCTGTTATGCGATCAACCAGATCCTGCTCTACGAGATGCAATGCAAGCACAATGCGTATATCCAGACTGGCCCACAGCTTTCTACATGCAGTCTGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCAGCTGACATGTTAAATGAGGCGGCTGCATTAGAAGAGAAGAAGCAAAGAGGAGCGAGAGGATCATAG 1068 0.4373 MNELISGENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVRSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKKQRGARGS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04220 355 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04220 355 Gene3D Transferase(Phosphotransferase) domain 1 2 187 - -
Tsu05g04220 355 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 4 354 IPR045845 GO:0004672|GO:0009742
Tsu05g04220 355 SUPERFAMILY TPR-like 247 349 IPR011990 GO:0005515
Tsu05g04220 355 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 4 354 - -
Tsu05g04220 355 Pfam Protein kinase domain 11 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04220 355 Gene3D Tetratricopeptide repeat domain 244 353 IPR011990 GO:0005515
Tsu05g04220 355 SUPERFAMILY Protein kinase-like (PK-like) 4 174 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04220 Tsu-Chr5 52736653 52743135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04220 12 178 Glycoside Hydrolase AT3G07070 34.225 2.46e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Tsu05g04220 Pkinase 2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04220 K14500 - gmx:100808907 693.345