Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04213 ATGGAGATGCAACAGCTTCTTAGCATGGGTTTCCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCCACCGGCGGCAAATCCACCGTTAAAGCCACCGAATGGATTCTCACTCACAAACCCAATTCCACCACCATTGTTAACCCTTCACCTTCACCTTCATCACTTCCTGCTTTCCAACCCAAACTCGACCGTTTTTTCCAAACCCCACAACCCAATATCTCACAACAAGAAACAGAAGAACCAAACAAACGCATCAAGTTATCATCTTCACCAACCCcacaaacacaacaacaacaaaacaaacccTCTTTTTTCTTCAACCGTTCTAAAAAACAACTAACTAAAACACAAACTCACGAACCCTTATACGAACGTCTTCGTCCAAGAACATTGGACGATGTTGTCGGACAAGATCATCTCTTATCAACAAATTCCATTCTTCGTTCTGCAATTCAACGTAACCGTCTTCCTTCTATCCTCTTATGGGGTCCACCAGGTACAGGTAAAACCACCATTGCAAAAGCTATTATCAATTCATCAAATTCAACTTCAACTTTCTATCGTTTTGTTTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGATGCTGTTGATGAAGCTAGAAAACTTAGactcaaaacaaatcaaactaCTGTTCTTTTTGTGGATGAAGTTCATAGGTTTAATAAATCTCAACAAGATTCTTTTTTACCTGTCATTGAAGATGGTAGCATTGTCTTTGTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACACCACTCTTGTCTCGTTGTCGTGTTCTTACACTTAACCCTCTTCAACCCCATCACTTGATTTTGCTTCTTAACCGCGCTGTCAATGATATAGATAAAGGGTTAGTGCAAAGCCTCGGTTTTGGTTCTGGTTCTGGTTCTTCCCAGGTTGATGTTAGTGTTGGTGAGGATGTGGTTGATTTTATAGCTAACAATTGCGATGGAGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTGCTGTTAATGCGGCTGCTCGGGTTCAACATGATAATGAAGAATGCAaagatgatgttgttgttggtggtggtgttggTGTTAATGTTAGTGTTGAGGATGCTAAGGAGGCACTTCAAAGCAAGCATCTTGCTTATGATAAAGCTGGGGAGGAACATTATAATTTAATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGTTGGCGAGAATGTTAAAGGGAGGTGAAGAGCCACTTTATATTGCACGTAGGCTTGTAAGATTTGCAAGTGAGGATGTTGGTTTGGCGGATCCTTTAGCTCTTAATCAAGCTGTTTCTTGCTACCAAGCTTGTCACTTTATAGGAATGCCCGAGTGCAATGTCATTCTTGCACAATGTGTTGCTTACTTGGCTTTGGCTCCTAAATCTATAGCAGTTTATCGAGCAATTGGAGCTGCTGAGAAGTTAGTGAGGGAATCTGTTGGACAGAATGAAGGTGTGCCTCTTCATCTCAGGAATGCACCAACCAAATTAATGAAGGAAGTTGGATATGGGAAGGGATATATATACACTCCTGATAACCCTTCCTCAACACAGAGCTACTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCCTCTGAATCTGATGGATAA 1701 0.4004 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSTTIVNPSPSPSSLPAFQPKLDRFFQTPQPNISQQETEEPNKRIKLSSSPTPQTQQQQNKPSFFFNRSKKQLTKTQTHEPLYERLRPRTLDDVVGQDHLLSTNSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIINSSNSTSTFYRFVSLSAVTSGVKDVRDAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLILLLNRAVNDIDKGLVQSLGFGSGSGSSQVDVSVGEDVVDFIANNCDGDARVALNVLEIAAVNAAARVQHDNEECKDDVVVGGGVGVNVSVEDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAEKLVRESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPDNPSSTQSYLPPSLQGFKFLHWPDRNPSESDG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04213 566 Pfam AAA C-terminal domain 313 406 IPR032423 -
Tsu05g04213 566 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 563 - -
Tsu05g04213 566 Pfam MgsA AAA+ ATPase C terminal 407 557 IPR021886 -
Tsu05g04213 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 356 IPR027417 -
Tsu05g04213 566 Gene3D - 485 564 - -
Tsu05g04213 566 CDD AAA 135 270 - -
Tsu05g04213 566 Gene3D - 381 484 - -
Tsu05g04213 566 PRINTS CbxX/CfqX superfamily signature 158 173 IPR000641 GO:0005524
Tsu05g04213 566 PRINTS CbxX/CfqX superfamily signature 209 228 IPR000641 GO:0005524
Tsu05g04213 566 PRINTS CbxX/CfqX superfamily signature 331 343 IPR000641 GO:0005524
Tsu05g04213 566 Gene3D - 277 362 - -
Tsu05g04213 566 MobiDBLite consensus disorder prediction 72 118 - -
Tsu05g04213 566 MobiDBLite consensus disorder prediction 85 112 - -
Tsu05g04213 566 Gene3D - 2 54 - -
Tsu05g04213 566 CDD HLD_clamp_RarA 277 347 - -
Tsu05g04213 566 SMART AAA_5 155 277 IPR003593 -
Tsu05g04213 566 Pfam ATPase family associated with various cellular activities (AAA) 159 271 IPR003959 GO:0005524|GO:0016887
Tsu05g04213 566 Gene3D - 109 275 IPR027417 -
Tsu05g04213 566 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Tsu05g04213 566 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Tsu05g04213 566 Pfam UBA/TS-N domain 4 35 IPR015940 -
Tsu05g04213 566 SUPERFAMILY post-AAA+ oligomerization domain-like 391 560 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04213 Tsu-Chr5 52650611 52652504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04213 121 407 Core DNA Replication Machinery Family AT1G77470 23.630 2.95e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04213 K07478 - gmx:100799257 826.624