Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04210 ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACCTTTGCAGCTGAGACTGTGAGACAGAGTTTTGGAGCAAGATCACTCCCTTCTTCAATTGGGTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAGCTGCTACTCCTCCCGTCAAGCAAAATGGAGCAAATAGGCCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTATGGATTTGATCCTCTAGGACTTTCAGATCCAGAAGGAACAGGAGGTTTCATTGAGCCAAGATGGCTAGCATACGGCGAGATAATCAACGGTCGCTACGCAATGTTGGGAGCAGTAGGAGCTATAGCACCTGAAATCCTTGGCAAAGCCGGTTTAATTCCACAGGAAACCGCTCTCGCTTGGTTCCAAACCGGCGTGATTCCACCAGCAGGAACATACAACTACTGGGCAGACAATTACACACTCTTTGTCTTGGAACTAGCACTTATGGGATTTGCAGAACATAGAAGATTCCAAGATTGGTATAACCCTGGTTCCATGGGAAAACAATACTTCTTAGGACTTGAAAAAGGTCTTGGTGGTTCTGGTGAACCAGCTTACCCTGGTGGACCTTTGTTTAATCCTCTTGGGTTTGGTAAAGATGAGAAATCATTGAAAGATTTAAAGCTTAAAGAAGTTAAGAATGGAAGATTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGGTCTTGTTACAGGTGTTGGACCATATCAAAACCTTTTAGATCATTTGGCTGATCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA 834 0.4365 MATQALVSSSSLTFAAETVRQSFGARSLPSSIGSSRKGSFVVKAAATPPVKQNGANRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLELALMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04210 277 Pfam Chlorophyll A-B binding protein 68 246 IPR022796 -
Tsu05g04210 277 SUPERFAMILY Chlorophyll a-b binding protein 55 273 - -
Tsu05g04210 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 276 IPR001344 GO:0009765|GO:0016020
Tsu05g04210 277 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 276 - -
Tsu05g04210 277 Gene3D Chlorophyll a/b binding protein domain 59 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04210 Tsu-Chr5 52635112 52637436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04210 19 277 Chloroplast and Mitochondria Gene Families AT1G61520 89.189 1.14e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04210 K08909 - gmx:100784090 483.796