Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04206 ATGGCAACCATTAATCCACAAAATGACAACAAAAGTGTTAGCTCAAATTTGATTATTGATTCAGACCCTTTGAACTGGGATTCAGCTGCTAATTCACTCAAGGGTAGCCACTTTGATGAAGTTAAAAGGATGGTAGAAGAGTACAAGAAGCCAGTGATATGTCTTGGTGGGGTGGAGACACTAACTATATCTCAGGTTGCTGCTGTTGCTAACAGTAGCTCACATGTTAAGGTTGAAGTTTCAGATTCTTCAAGGGCTGGTGTTGAAGCCAGCTGCGAGTGGATCGCGGAAAATATTGAAAAAGGCACTGCTATATATGGTGTTACCACTGGTTTTGGTGCTGCCTCACATAGAAGAACTGAACAAGGCTTTGCTCTTCAGAAGGAGATGGTTAGGTTTCTAAACTGCGCGATATTTGGGCGTGAATCTGAGTTATCTCATACACTGCCTCGGTCAGCAACAAGAGCAGCTATGCTTGTAAGGGTCAATACCCTTCTTCAAGGCTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAACTACTCAACCATAATGTCACGCCAAGCTTGCCATTACGCGGTTCTGTTACTGCTTCCGGTGATCTAATTCCTCTGTCCTACATCGCTGCATTGCTAACTGGTAGGCGAAATTCCCGAGCTGTTGGACCCTCAAAACAGTCGCTTAATGCCAAGGAAGCTTTCCATTTAGCAGGTCTGAATTCTGGGTTCTTCGAGTTAAAGCCGAAGGAAGGTCTTGCTCTTGTTAATGGCACCGCTGTTGGATCTGGTGTGGCTTCTACGGTGCTTTTCGAGGCAAACGTATTAGCTTTGTTGTCAGTAGTTCTATCAGCAGTTTTTACCGAAGTCATGCAAGGGAAGCCAGAATTTACACATCATCTTATACATAAGCTGAAGTTTCATCCAGGTCAAATCGAGGCTGCTGCTATTATGGAACACATTTTAGACGGAAGCTCTTATATCAGAAACGCAAAACTGCAGAAGCCAGATCCATTGCAGAAGCCAAGAAAAGATCGTTACGCTCTTGTAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAGGTCATCCGGTTTTCGACCAAATCGATTGAAAGGGAAATAAATTCAGTGAATGACAATCCTCTGATTGATGTCACTAGGGATAAGGCTCTGAATGGTGGTAATTTCCAAGGCACACCAATAGGAGTTTCAATGGATAATGTACGTTTAGCTATTGCTTCAATTGGAAAACTCGTCTTTGCACAATTTACCGAGCTAGTCAATGACTTGTATAATAATGGGTTGCCATCAAATCTTTCTGCTGGTAGAAACCCAAGTTTGGATTATGGTTTTAAGGCATCTGAGGTGGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAATCCTGTGACAAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTAGGGTTGATTTCTGCTATGAAAACTGCGGAAGCCATTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGCCAAGCTATTGATTTGAGGCATTTGGAGGAAATTTTTAAGAACACTGTTAAGAATACTATAAGCAGAGTTGCAAAGAAGACATTAGTATCGGAAGACAAAGAAGAAACTAATCCATTTAGATTTTGTGAGGAAAATTTACTCAAAGTGGTTGATAGAGAATATGTATTCTCCTACATAGATGATCCCTTTAATATTGCGTACCCGTTAATGCCGAAACTAAAGCAAGTACTTTATGAGCATGCACACATCAGTGCCGTTAATGACAAGAATGCGAGCTTGTCAATATTTGAGAAGATTGGAGCATTTGACGAAGAATTGAAGTCTCTATTGCCAAAGGAAGTTGAAAGTGCAAGGGTAGCATTTGAGAAGGGAAATCCAGAAATTCCAAACAGAATTAAGGAATGTAGATCATACCCACTATACAAGTTTGTGAGGGAAGAATTAAAGATAGGGTTGCTGACAGGAGAAAAGGATGTCACACCAGATGAGGAATTTGAAAAAGTATATACAGCAATTTGTCAAGCAAAGATTATTGATCCAATTCTGGAATGTCTTGGTGATTGGAAGGGAGTTCCCATCCCAATATAA 2139 0.4109 MATINPQNDNKSVSSNLIIDSDPLNWDSAANSLKGSHFDEVKRMVEEYKKPVICLGGVETLTISQVAAVANSSSHVKVEVSDSSRAGVEASCEWIAENIEKGTAIYGVTTGFGAASHRRTEQGFALQKEMVRFLNCAIFGRESELSHTLPRSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPSLPLRGSVTASGDLIPLSYIAALLTGRRNSRAVGPSKQSLNAKEAFHLAGLNSGFFELKPKEGLALVNGTAVGSGVASTVLFEANVLALLSVVLSAVFTEVMQGKPEFTHHLIHKLKFHPGQIEAAAIMEHILDGSSYIRNAKLQKPDPLQKPRKDRYALVTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVTRDKALNGGNFQGTPIGVSMDNVRLAIASIGKLVFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAMKTAEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTISRVAKKTLVSEDKEETNPFRFCEENLLKVVDREYVFSYIDDPFNIAYPLMPKLKQVLYEHAHISAVNDKNASLSIFEKIGAFDEELKSLLPKEVESARVAFEKGNPEIPNRIKECRSYPLYKFVREELKIGLLTGEKDVTPDEEFEKVYTAICQAKIIDPILECLGDWKGVPIPI 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04206 712 Gene3D - 526 647 IPR023144 -
Tsu05g04206 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tsu05g04206 712 Pfam Aromatic amino acid lyase 61 526 IPR001106 -
Tsu05g04206 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1 712 - -
Tsu05g04206 712 CDD PAL-HAL 59 523 IPR001106 -
Tsu05g04206 712 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Tsu05g04206 712 PANTHER HISTIDINE AMMONIA-LYASE 1 712 IPR001106 -
Tsu05g04206 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Tsu05g04206 712 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
Tsu05g04206 712 Gene3D - 13 260 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04206 Tsu-Chr5 52619138 52621812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04206 14 712 Monolignol Biosynthesis Gene Families AT2G37040 71.755 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04206 K10775 - gmx:100787872 1209.13