Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04203 ATGGCCACCACCGGCGAACAACTTCCGTGCGACGCCGACGGTGTTTGTATGGTATGTAAAACCAAACCTCAAGAAACCGAAACTCTCAACTGCCGAACATGCGCATCACTCTGGCATGTTCCTTGTTTACCAGAAGTTCCAACAACTATCCTCGATTGGGAATGTCCTGATTGTTCTACACCACTTCTTGTTAACGATACCACCGTCGCTGATGCTGAAACAGCACCGGTGCCGGTAACGGCTCCTTCTGTAGCCGGCGATCTCATTTCTGCTATACGTGCCATCGAAAACGACGCTTCACTTACCGATGTAGAAAAAGCGAAGAAACGTCAAGAACTTGTTGGTGGATCTTCGAAAGCAAGTGATGAAGTGAAGAATAGACGTAGTGGCGTTCTTGATATTTTCGATGGTAGCATTAACTGTTCTTTCTGTATGCAGTTGCCTGAGAGACCTGTTACTACTTCATGTGGGCACAATTTTTGCCTGAAGTGTTTTGAGAAATGGATTCAGCAAGGGAAACGAACTTGTGCGAATTGTAGGGCTGCAATTCCAGCAAAGATGGCGAGTAATCCAAGAATCAATGCACAGTTGGCAATTGGGATTCGTATGGCCAAACTAGCTAGATCGGAGAATGCTGGAGGAAGCACTGCTACAAAGGTTTATCATGTTGTTCACAATGATGAGCGTCCCGACACTTGTTTCAGGACAGAGAGAGCAAAGAAAACTGGGAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACCGATTGGTGCTGAGAATGATCCAATAAGGAAACGTGGGGTTCTTGTTGGCGAAACTTGGGAGGATAGGATGGAATGCAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTACTCATGGTGCTCAATCTGTTGCTCTTTCTGGGGGCTATGTTGATGACGAGGATCACGGTGAGTGGTTCTTGTACACTGGAAGTGGCGGAAGGGATTTGAGTGGGAACAAGCGGACAAACAAAGATCAGTCCTTTGATCAGCAGTTTGAGAATATGAATGAGGCTTTGAGAGTCAGCTGCCGAAAAGGTTATCCTGTTCGTGTTGTCAGGTCCCACAAGGAGAAACGTTCCTCTTATGCGCCAGAAGCAGGAGTGAGATATGATGGGGTTTACAGAATTGAGAAATGTTGGCGCAAAGTTGGAGTGCAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATCTGGAGACCGTCCCCGTCCACTACCTACAGTAAAGGAATTTAAGGGTGCAGTGGATATTACTGAAAGGAAGGGTGACCCTTCATGGGACTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGCAAGAAGCCAATGAATGTTGTGGATCCTATAGATccaacaaaaattcaaattgttaGGCCAAAGGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTCCCCACTTACTACACCTTGTGCCCATAACTTCTGCAAAGGCTGCCTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAACAGGGCCACTAAAAGTGGACGCAGTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGTTCAACCGATATAGCTGATTACCTTCAGAATCCTCAGGTTAACAGGGAAATGATGGGGGTCATAGAAACACTCCAGCGTCAGGCTGAACAGATGGATGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTGATGAGAATCTCAAGCCAGATGAGGAGACAGATGTTTCAAAACCCTCAGATTCAAATGAGAAAGTTGAGGAAGAAATTAACAAGAATGATCTGAATCCTCTTCCACAGAAGCGGAGGAAAGGCGCCGATGGCAAGACTGTGGTGAACACGGAGGAACCTGTTGATGAGGCAGAAGTGGAAAACAAAGCAGTGACTTGCAATTAG 2055 0.4555 MATTGEQLPCDADGVCMVCKTKPQETETLNCRTCASLWHVPCLPEVPTTILDWECPDCSTPLLVNDTTVADAETAPVPVTAPSVAGDLISAIRAIENDASLTDVEKAKKRQELVGGSSKASDEVKNRRSGVLDIFDGSINCSFCMQLPERPVTTSCGHNFCLKCFEKWIQQGKRTCANCRAAIPAKMASNPRINAQLAIGIRMAKLARSENAGGSTATKVYHVVHNDERPDTCFRTERAKKTGKANACSGKIFVTIPKDHFGPIGAENDPIRKRGVLVGETWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQQFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKVGVQGHKVCRYLFVRCDNEPAPWTSDLSGDRPRPLPTVKEFKGAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNVVDPIDPTKIQIVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRATKSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIETLQRQAEQMDEESSEESSAKSDENLKPDEETDVSKPSDSNEKVEEEINKNDLNPLPQKRRKGADGKTVVNTEEPVDEAEVENKAVTCN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04203 684 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 IPR018957 GO:0046872
Tsu05g04203 684 SMART ring_2 517 574 IPR001841 -
Tsu05g04203 684 SMART ring_2 16 58 IPR001841 -
Tsu05g04203 684 SMART ring_2 141 179 IPR001841 -
Tsu05g04203 684 ProSiteProfiles Zinc finger RING-type profile. 141 180 IPR001841 -
Tsu05g04203 684 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Tsu05g04203 684 MobiDBLite consensus disorder prediction 602 684 - -
Tsu05g04203 684 SMART G9a_1 266 423 IPR003105 -
Tsu05g04203 684 SUPERFAMILY PUA domain-like 245 439 IPR015947 -
Tsu05g04203 684 MobiDBLite consensus disorder prediction 602 676 - -
Tsu05g04203 684 Gene3D - 242 436 IPR036987 -
Tsu05g04203 684 ProSiteProfiles Zinc finger RING-type profile. 517 575 IPR001841 -
Tsu05g04203 684 Coils Coil 588 615 - -
Tsu05g04203 684 SUPERFAMILY FYVE/PHD zinc finger 5 60 IPR011011 -
Tsu05g04203 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 204 IPR013083 -
Tsu05g04203 684 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 675 - -
Tsu05g04203 684 Pfam SAD/SRA domain 274 422 IPR003105 -
Tsu05g04203 684 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Tsu05g04203 684 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Tsu05g04203 684 Pfam RING-type zinc-finger 517 558 IPR027370 -
Tsu05g04203 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 632 IPR013083 -
Tsu05g04203 684 SUPERFAMILY RING/U-box 133 187 - -
Tsu05g04203 684 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 675 IPR045134 -
Tsu05g04203 684 SUPERFAMILY RING/U-box 509 600 - -
Tsu05g04203 684 CDD RING-HC 141 179 - -
Tsu05g04203 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 75 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04203 Tsu-Chr5 52595795 52600239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04203 7 606 C2H2 Transcription Factor Family AT5G39550 61.157 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04203 K10638 - gmx:100786796 945.266