Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04187 ATGATTGAGAAAATGGAGATGGAGAAAGCAAAACAAGTAACCGATGAAGAAGCATTCCTTTTTGCAATGGAACTAGCTGGTGCTTCTTCTGTTCCAATGGTTCTAAAATCAGCTTTGGATCTTGGAATAATTGAAATTATAGCAAAAACTGATCCTAATGCATACCTTTCATCTTCTAACATTGCTTCTCAAATACCTTCCATGAAAAACCAAGATGCACCTTCTATGTTGGACCGTTTGTTACGACTCCTGGCTAGCTACAAAATCCTTACTTGTTCTATTCAACATCAAGATGATGAAATACTCTATGATACATATCTTGTCCCAGAACATGGTTTGGGACTTGCACATTTTTATCTGCTCCCTGTCCAGAGGTTTGAAGATAGGGTTAAAATAGATTGGCCATCTCCGTTTCAAAAGGATGATAGTAGTGGTATTTATATTTTGGGTTCCGCCGGTATTAATGGCATTCTTTGTCTCTGTCAAAGACATAAAAGACGACTTGTACTATGGAACCCATTTACCGGTGAATTCAAGGTCATTCCTTTTAGCCTTTGTCATGAGTATCTACCAAATGACTGTGGTGGACCTTTGTATCATTTTCATGGATTCGGTTATGATCATGTAACACAGGACTATAAAGTGATTCAATCTGTGGATTCATATCCTGTAGGTGAAGACGAAGAGATTGTAGGTAAAGATACATTCTGGATGATATATTCTCTAAGAAGTAACTCTTGGACGAAGCTTGATCTTAATCTACCAAATCATTATGCCTTTACGGAAAATCATATGGTCGGAGTGTACACAAATGGTGTTTGTCATTGGTGGGGTATAACTGATGACTCACCGAACATGGAAGATAATAGAGAATATTTGTTGTCCTTTAACTTTAGCAATGAGCTGATGTTTACAACACAAAGTCCCTCATACTTGGATGTTAGGCTGCGTGGTTGCAGCTGCAGATCCAGGATCCTACCTCTACTGCTGAGGCCAGGCCATGGAGGCGAAACAAAGATGGGGTTGTTGTTGTCGTTGAGACATAGTTATGTTATGATGTTTGTTATAATTGGGTTGTTGTTGAAAGAAACAGAAGGGATCAGATTTGTGATAGATAGAGATGAATGTTTTTCACATGATGTTAAGTACGAGGGTGACACTGTTCATGTTTCTTTCGTTGTTATTAAGGCTGATTCTCCTTGGCATTATGGTGATGAAGGTGTTGATCTTGtgGTAAAGGGGCCTGCTGGAGAACAAATTCAAGATTATCGTGACAAGACCGGtgaaaagtttgaatttgtggCTCACAAATCAGGGGTCCATAAGTTTTGTTTCACCAACAAATCTCCTTATCACGAGACCATTGATTTTGATGTGCATGTTGGTCACTTCTCTTACTTCGAGCAACATGCAAAAGACGAGCATTTCAACCCTTTGTTGGAGCAGATAGCGAAGTTGGAGGAAGCTCTTTATAATATTCAGTTTGAACAACATTGGTTAGAAGCTCAGACTGATCGCCAAGCAATAGTGAATGATGGGATGAGCCGAAGAGCAATACACAAGGCAATCTTTGAATCAGCAGCACTAATTGGAGCTAGTGCACTACAAGTTTATCTTCTGCGGCGCTTGTTTGAACGAAAGTTGGGAACCTCCAGAGTTTAG 1662 0.3917 MIEKMEMEKAKQVTDEEAFLFAMELAGASSVPMVLKSALDLGIIEIIAKTDPNAYLSSSNIASQIPSMKNQDAPSMLDRLLRLLASYKILTCSIQHQDDEILYDTYLVPEHGLGLAHFYLLPVQRFEDRVKIDWPSPFQKDDSSGIYILGSAGINGILCLCQRHKRRLVLWNPFTGEFKVIPFSLCHEYLPNDCGGPLYHFHGFGYDHVTQDYKVIQSVDSYPVGEDEEIVGKDTFWMIYSLRSNSWTKLDLNLPNHYAFTENHMVGVYTNGVCHWWGITDDSPNMEDNREYLLSFNFSNELMFTTQSPSYLDVRLRGCSCRSRILPLLLRPGHGGETKMGLLLSLRHSYVMMFVIIGLLLKETEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPAGEQIQDYRDKTGEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHVGHFSYFEQHAKDEHFNPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAIHKAIFESAALIGASALQVYLLRRLFERKLGTSRV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04187 553 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 354 549 IPR015720 -
Tsu05g04187 553 ProSiteProfiles GOLD domain profile. 374 461 IPR009038 -
Tsu05g04187 553 Pfam Dimerisation domain 33 85 IPR012967 GO:0046983
Tsu05g04187 553 PANTHER TMP21-RELATED PROTEIN-RELATED 354 549 - -
Tsu05g04187 553 Gene3D - 2 110 IPR036388 -
Tsu05g04187 553 Pfam emp24/gp25L/p24 family/GOLD 374 545 IPR009038 -
Tsu05g04187 553 SUPERFAMILY "Winged helix" DNA-binding domain 15 106 IPR036390 -
Tsu05g04187 553 TIGRFAM F_box_assoc_1: F-box protein interaction domain 154 303 IPR017451 -
Tsu05g04187 553 SMART EMP24_GP25L_2 366 545 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04187 Tsu-Chr5 52463273 52472890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04187 12 132 Monolignol Biosynthesis Gene Families AT5G54160 48.760 1.22e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04187 - - gmx:100527418 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04187 05 52463273 52472890 Tsu05g04187 05 52463273 52472890 ECH