Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04167 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCGTGGGACACAAATGAAGAACGACTCAGGGAGTATTTCAGTACTTATGGTGAGGTTAAGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCACGTGGATTTGGTTTTGTTGTTTTCATTGACCCAGCTGTTGCAGAAATTGTCATCAAAGAGAAGCACAACATCGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTCGTGATGATCAGAATGTATTGAGTAGAACCAGTGGCAGCATCCAAGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCACGAGGCTTTGGATTTATCACTTATGATTCAGAAGAGGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCTCCTCTCAGCGGATACAACTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAGTCAAGGGTACAGTCCAAGTACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGGTTCAGTCCGGTTGCTAGTGGTCGAAATGCATTTGCGCCATTTGGTTCTGCTTATGGAATGGGTATGAATTTCGAGCCTGGTTTGAGCCCTGGATTTGGAGGTAATGCAAATTTCAATGGAAATCTTAGCTATGGACGGGGCTTAAATCCATACTTCATCGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGTAATGGAGGAAACAATTCGTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGGAATGGCAGCCTTAACTATGGAACAAATTCTGCAAATTCCAGTGCATACATTGGATCAGGGACTGGAAATGTTGGAGGTAATGCATTTGGCAATACTGGAGTCAACTGGAGTTCTTCGCCGATTTCTGGACACGGGGGAGGGAACAATGTGTCACAGGGTAGTGGTAACCTTGGATATGGTGGTGGCAACAACGGTTATGGATTAGGAACCGAAGGGTATGGAAGAAGCAGTGGTTCCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGGTGTTGATGGAGCTTTTGCTGATTTTTACAACAATAATTCGGTCTATGGGGACACCACTTGGCGATCTTCGAATTCTGAGAGAGATGGATCTGGCCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCGGATGTTTCTGCCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGACAGCCAAATAGGGGAATTACTACATAG 1440 0.4451 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFSQGYSPSTVGGYGLRMDGRFSPVASGRNAFAPFGSAYGMGMNFEPGLSPGFGGNANFNGNLSYGRGLNPYFIGSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSSAYIGSGTGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSASNGGGVDGAFADFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAASDVSAKTSPGYVGGYTVNKRQPNRGITT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04167 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Tsu05g04167 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Tsu05g04167 479 SUPERFAMILY RNA-binding domain, RBD 103 202 IPR035979 GO:0003676
Tsu05g04167 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Tsu05g04167 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Tsu05g04167 479 Gene3D - 4 88 IPR012677 -
Tsu05g04167 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Tsu05g04167 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Tsu05g04167 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Tsu05g04167 479 Gene3D - 103 189 IPR012677 -
Tsu05g04167 479 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Tsu05g04167 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Tsu05g04167 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Tsu05g04167 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04167 Tsu-Chr5 52294072 52298640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04167 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 28.025 2.86e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04167 K14411 - gmx:100795907 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04167 05 52294072 52298640 Tsu05g04167 05 52294072 52298640 ECH